| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 25-112 | 88 | 1-24 | 123-131 | 113-122 | 24 | 9 | slipknot |
Chain Sequence |
MKKHGILNSHLAKILADLGHTDKIVIADAGLPVPDGVLKIDLSLKPGLPAFQDTAAVLAEEMAVEKVIAAAEIKASNQENAKFLENLFSEQEIEYLSHEEFKLLTKDAKAVIRTGEFTPYANCILQAGVLF
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
2.1 | 16-111 | 96 | 1-15 | 117-131 | 112-116 | 15 | 15 | slipknot | ||
| view details |
 |
3.1 | 21-114 | 94 | 1-20 | 123-131 | 115-122 | 20 | 9 | slipknot | ||
| view details |
|
2.1 | 9-122 | 114 | 1-8 | 126-131 | 123-125 | 8 | 6 | slipknot | ||
| view details |
|
2.1 | 13-122 | 110 | 1-8, 126-131 | 9-12, 123-125 | 8 | 6 | slipknot | |||
| view details |
|
3.1 | 23-114 | 92 | 1-20, 123-131 | 21-22, 115-122 | 20 | 9 | slipknot | |||
| view details |
|
3.1 | 23-113 | 91 | 1-17, 115-131 | 18-22, 114-114 | 17 | 17 | slipknot |
| sequence length |
131
|
| structure length |
131
|
| publication title |
Crystal Structures of Rbsd Leading to the Identification of Cytoplasmic Sugar-Binding Proteins with a Novel Folding Architecture
pubmed doi rcsb |
| molecule tags |
Transport
|
| molecule keywords |
HIGH AFFINITY RIBOSE TRANSPORT PROTEIN RBSD
|
| total genus |
 Genus: 34
|
| ec nomenclature |
ec
5.4.99.62: D-ribose pyranase. |
| pdb deposition date | 2003-04-30 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF05025 | RbsD_FucU | RbsD / FucU transport protein family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | RbsD-like fold | RbsD-like domain |
#chains in the KnotProt database with same CATH superfamily 4A34 A; 3P12 A; 2WCU A; 3P13 A; 1OGF A; 2WCV A; 2OB5 A; 3MVK A; 1OGE A; 1OGC A; 3E7N A; 1OGD A; #chains in the KnotProt database with same CATH topology 4A34 A; 3P12 A; 2WCU A; 3P13 A; 1OGF A; 2WCV A; 2OB5 A; 3MVK A; 1OGE A; 1OGC A; 3E7N A; 1OGD A; #chains in the KnotProt database with same CATH homology 4A34 A; 3P12 A; 2WCU A; 3P13 A; 1OGF A; 2WCV A; 2OB5 A; 3MVK A; 1OGE A; 1OGC A; 3E7N A; 1OGD A;
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
