3E7NA

Crystal structure of d-ribose high-affinity transport system from salmonella typhimurium lt2
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 27-123 97 1-26 133-140 124-132 26 8 slipknot
Chain Sequence
NAMKKGTVLNSEISSVISRLGHTDTLVVCDAGLPIPNSTARIDMALTQGVPSFMQVVDVVTREMQVEAAILATEIKQQNPQLHETLLTHLEQLQQHQGNTIKISYTTHEQFKKLTADSQAVIRSGECSPYANVILCAGVT
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
2.1 16-124 109 1-15 134-140 125-133 15 7 slipknot
view details
2.1 14-133 120 1-13 136-140 134-135 13 5 slipknot
view details
2.1 14-135 122 1-1, 137-140 2-13, 136-136 1 4 slipknot
view details
3.1 24-124 101 1-15, 134-140 16-23, 125-133 15 7 slipknot
publication title Crystal structure of d-ribose high-affinity transport system from salmonella typhimurium lt2
rcsb
structure length 140
molecule tags Transport protein
source organism Salmonella typhimurium
sequence length 140
total genus Genus: 49
molecule keywords D-ribose high-affinity transport system
ec nomenclature ec 5.4.99.62: D-ribose pyranase.
pdb deposition date 2008-08-18
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05025 RbsD_FucU RbsD / FucU transport protein family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1650.10 Alpha Beta 3-Layer(aba) Sandwich RbsD-like fold RbsD-like domain 3e7nA01
1OGFA 2WCVA 3P13A 1OGCA 3E7NA 2WCUA 3P12A 1OGDA 4A34A 2OB5A 1OGEA 3MVKA
chains in the KnotProt database with same CATH superfamily
1OGFA 2WCVA 3P13A 1OGCA 3E7NA 2WCUA 3P12A 1OGDA 4A34A 2OB5A 1OGEA 3MVKA
chains in the KnotProt database with same CATH topology
1OGFA 2WCVA 3P13A 1OGCA 3E7NA 2WCUA 3P12A 1OGDA 4A34A 2OB5A 1OGEA 3MVKA
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 1OGF A;  2WCV A;  3P13 A;  1OGC A;  3E7N A;  2WCU A;  3P12 A;  1OGD A;  4A34 A;  2OB5 A;  1OGE A;  3MVK A; 
#chains in the KnotProt database with same CATH topology
 1OGF A;  2WCV A;  3P13 A;  1OGC A;  3E7N A;  2WCU A;  3P12 A;  1OGD A;  4A34 A;  2OB5 A;  1OGE A;  3MVK A; 
#chains in the KnotProt database with same CATH homology
 1OGF A;  2WCV A;  3P13 A;  1OGC A;  3E7N A;  2WCU A;  3P12 A;  1OGD A;  4A34 A;  2OB5 A;  1OGE A;  3MVK A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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