Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
view details | +31 | 20-113 | 94 | 1-19 | 121-129 | 114-120 | 19 | 9 | slipknot |
Chain Sequence |
VLNEHISKAIATIGHFDLLTINDAGMPIPNDHRRIDLAVTKNLPRFIDVLATVLEEMEIQKIYLAEEIKEHNPTQLQQIKQLISSEIEIIFIPHEEMKSNLAHPLNKGNIRTGETTPYSNIALESNVTF
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
view details | 3.1 | 15-112 | 98 | 1-14 | 120-129 | 113-119 | 14 | 10 | slipknot | |||
view details | 3.1 | 13-119 | 107 | 1-1, 122-129 | 2-12, 120-121 | 1 | 8 | slipknot | ||||
view details | 3.1 | 19-112 | 94 | 1-14, 120-129 | 15-18, 113-119 | 14 | 10 | slipknot |
sequence length |
129
|
structure length |
129
|
publication title |
Crystal structure of Sa240: A ribose pyranase homolog with partial active site from Staphylococcus aureus
pubmed doi rcsb |
molecule tags |
Isomerase
|
molecule keywords |
D-ribose pyranase
|
source organism |
Staphylococcus aureus
|
total genus |
Genus: 40
|
ec nomenclature |
ec
5.4.99.62: D-ribose pyranase. |
pdb deposition date | 2010-09-29 |
KnotProt deposition date | 2014-08-20 |
chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
---|---|---|---|
A | PF05025 | RbsD_FucU | RbsD / FucU transport protein family |
cath code
| Class | Architecture | Topology | Homology | Domain |
---|---|---|---|---|---|
Alpha Beta | 3-Layer(aba) Sandwich | RbsD-like fold | RbsD-like domain |
#chains in the KnotProt database with same CATH superfamily 1OGE A; 1OGF A; 2OB5 A; 1OGC A; 2WCV A; 3P13 A; 3P12 A; 3MVK A; 2WCU A; 1OGD A; 3E7N A; 4A34 A; #chains in the KnotProt database with same CATH topology 1OGE A; 1OGF A; 2OB5 A; 1OGC A; 2WCV A; 3P13 A; 3P12 A; 3MVK A; 2WCU A; 1OGD A; 3E7N A; 4A34 A; #chains in the KnotProt database with same CATH homology 1OGE A; 1OGF A; 2OB5 A; 1OGC A; 2WCV A; 3P13 A; 3P12 A; 3MVK A; 2WCU A; 1OGD A; 3E7N A; 4A34 A;
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...