3P12A

Crystal structure of d-ribose pyranase sa240
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 20-113 94 1-19 121-129 114-120 19 9 slipknot
Chain Sequence
VLNEHISKAIATIGHFDLLTINDAGMPIPNDHRRIDLAVTKNLPRFIDVLATVLEEMEIQKIYLAEEIKEHNPTQLQQIKQLISSEIEIIFIPHEEMKSNLAHPLNKGNIRTGETTPYSNIALESNVTF
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 15-112 98 1-14 120-129 113-119 14 10 slipknot
view details
3.1 13-119 107 1-1, 122-129 2-12, 120-121 1 8 slipknot
view details
3.1 19-112 94 1-14, 120-129 15-18, 113-119 14 10 slipknot
sequence length 129
structure length 129
publication title Crystal structure of Sa240: A ribose pyranase homolog with partial active site from Staphylococcus aureus
pubmed doi rcsb
molecule tags Isomerase
molecule keywords D-ribose pyranase
source organism Staphylococcus aureus
total genus Genus: 40
ec nomenclature ec 5.4.99.62: D-ribose pyranase.
pdb deposition date 2010-09-29
KnotProt deposition date 2014-08-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05025 RbsD_FucU RbsD / FucU transport protein family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1650.10 Alpha Beta 3-Layer(aba) Sandwich RbsD-like fold RbsD-like domain 3p12A01
4A34A 3P13A 1OGFA 2OB5A 1OGDA 2WCVA 2WCUA 1OGEA 3P12A 1OGCA 3MVKA 3E7NA
chains in the KnotProt database with same CATH superfamily
4A34A 3P13A 1OGFA 2OB5A 1OGDA 2WCVA 2WCUA 1OGEA 3P12A 1OGCA 3MVKA 3E7NA
chains in the KnotProt database with same CATH topology
4A34A 3P13A 1OGFA 2OB5A 1OGDA 2WCVA 2WCUA 1OGEA 3P12A 1OGCA 3MVKA 3E7NA
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 4A34 A;  3P13 A;  1OGF A;  2OB5 A;  1OGD A;  2WCV A;  2WCU A;  1OGE A;  3P12 A;  1OGC A;  3MVK A;  3E7N A; 
#chains in the KnotProt database with same CATH topology
 4A34 A;  3P13 A;  1OGF A;  2OB5 A;  1OGD A;  2WCV A;  2WCU A;  1OGE A;  3P12 A;  1OGC A;  3MVK A;  3E7N A; 
#chains in the KnotProt database with same CATH homology
 4A34 A;  3P13 A;  1OGF A;  2OB5 A;  1OGD A;  2WCV A;  2WCU A;  1OGE A;  3P12 A;  1OGC A;  3MVK A;  3E7N A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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