| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 25-121 | 97 | 1-24 | 132-140 | 122-131 | 24 | 9 | slipknot |
Chain Sequence |
LKHIPKNISPDLLKTLMEMGHGDEIVLADANYPSASCANKLIRCDGVNIPELLDSILYLMPLDSYVDSSIQFMNVVSGDDIPKIWGTYRQMIEGHGTDLKTITYLRREDFYERSKKAYAIVATGETSLYANIILKKGVVV
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
2.1 | 11-119 | 109 | 1-10 | 126-140 | 120-125 | 10 | 15 | slipknot | ||
| view details |
 |
3.1 | 11-125 | 115 | 1-10 | 129-140 | 126-128 | 10 | 12 | slipknot | ||
| view details |
|
2.1 | 11-128 | 118 | 1-10 | 131-140 | 129-130 | 10 | 10 | slipknot | ||
| view details |
|
2.1 | 23-121 | 99 | 1-10, 127-140 | 11-22, 122-126 | 10 | 14 | slipknot | |||
| view details |
|
3.1 | 23-126 | 104 | 1-7, 132-140 | 8-22, 127-131 | 7 | 9 | slipknot |
| sequence length |
140
|
| structure length |
140
|
| publication title |
Structure of the Fucose Mutarotase from Streptococcus Pneumoniae in Complex with L-Fucose
pubmed doi rcsb |
| molecule tags |
Isomerase
|
| molecule keywords |
RBSD/FUCU TRANSPORT PROTEIN FAMILY PROTEIN
|
| source organism |
Streptococcus pneumoniae
|
| total genus |
 Genus: 45
|
| ec nomenclature | |
| pdb deposition date | 2011-09-29 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF05025 | RbsD_FucU | RbsD / FucU transport protein family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | RbsD-like fold | RbsD-like domain |
#chains in the KnotProt database with same CATH superfamily 3MVK A; 2OB5 A; 2WCU A; 1OGC A; 3P12 A; 3E7N A; 4A34 A; 1OGF A; 2WCV A; 1OGE A; 1OGD A; 3P13 A; #chains in the KnotProt database with same CATH topology 3MVK A; 2OB5 A; 2WCU A; 1OGC A; 3P12 A; 3E7N A; 4A34 A; 1OGF A; 2WCV A; 1OGE A; 1OGD A; 3P13 A; #chains in the KnotProt database with same CATH homology 3MVK A; 2OB5 A; 2WCU A; 1OGC A; 3P12 A; 3E7N A; 4A34 A; 1OGF A; 2WCV A; 1OGE A; 1OGD A; 3P13 A;
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
