2WCUA

Crystal structure of mammalian fucu
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 28-130 103 1-27 142-149 131-141 27 8 slipknot
Chain Sequence
MVALKGIPKVLSPELLFALARMGHGDEIVLADANFPTSSICQCGPVEIRADGLDIPQLLEAVLRLLPLDTYVESPAAVMDLVPSDKEKGLQTPIWKRYESLLLEADCKKTLMKLERFEFYERAKKAFAVVATGEMALYGNIILKKGTLD
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 9-130 122 1-8 138-149 131-137 8 12 slipknot
view details
3.1 15-131 117 1-9, 138-149 10-14, 132-137 9 12 slipknot
view details
3.1 15-137 123 1-9, 141-149 10-14, 138-140 9 9 slipknot
view details
3.1 22-132 111 1-14, 140-149 15-21, 133-139 14 10 slipknot
view details
3.1 25-132 108 1-21, 140-149 22-24, 133-139 21 10 slipknot
view details
3.1 27-133 107 1-24, 140-149 25-26, 134-139 24 10 slipknot
sequence length 149
structure length 149
publication title Crystal Structures and Enzyme Mechanism of a Dual Fucose Mutarotase/Ribose Pyranase
pubmed doi rcsb
molecule tags Isomerase
molecule keywords PROTEIN FUCU HOMOLOG
source organism Mus musculus
total genus Genus: 44
ec nomenclature ec 5.1.3.29: L-fucose mutarotase.
pdb deposition date 2009-03-17
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05025 RbsD_FucU RbsD / FucU transport protein family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1650.10 Alpha Beta 3-Layer(aba) Sandwich RbsD-like fold RbsD-like domain 2wcuA01
1OGEA 3P12A 1OGDA 2WCUA 1OGCA 3E7NA 4A34A 1OGFA 3MVKA 3P13A 2OB5A 2WCVA
chains in the KnotProt database with same CATH superfamily
1OGEA 3P12A 1OGDA 2WCUA 1OGCA 3E7NA 4A34A 1OGFA 3MVKA 3P13A 2OB5A 2WCVA
chains in the KnotProt database with same CATH topology
1OGEA 3P12A 1OGDA 2WCUA 1OGCA 3E7NA 4A34A 1OGFA 3MVKA 3P13A 2OB5A 2WCVA
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 1OGE A;  3P12 A;  1OGD A;  2WCU A;  1OGC A;  3E7N A;  4A34 A;  1OGF A;  3MVK A;  3P13 A;  2OB5 A;  2WCV A; 
#chains in the KnotProt database with same CATH topology
 1OGE A;  3P12 A;  1OGD A;  2WCU A;  1OGC A;  3E7N A;  4A34 A;  1OGF A;  3MVK A;  3P13 A;  2OB5 A;  2WCV A; 
#chains in the KnotProt database with same CATH homology
 1OGE A;  3P12 A;  1OGD A;  2WCU A;  1OGC A;  3E7N A;  4A34 A;  1OGF A;  3MVK A;  3P13 A;  2OB5 A;  2WCV A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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