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Jmol._Canvas2D (Jmol) "jmolApplet0"[x]
Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
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+31 | 25-113 | 89 | 1-24 | 123-131 | 114-122 | 24 | 9 | slipknot |
Chain Sequence |
MKKHGILNSHLAKILADLGHTDKIVIADAGLPVPDGVLKIDLSLKPGLPAFQDTAAVLAEEMAVEKVIAAAEIKASNQENAKFLENLFSEQEIEYLSHEEFKLLTKDAKAVIRTGEFTPYANCILQAGVLF
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
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3.1 | 15-115 | 101 | 1-14 | 125-131 | 116-124 | 14 | 7 | slipknot | ||
view details |
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3.1 | 6-124 | 119 | 1-5 | 126-131 | 125-125 | 5 | 6 | slipknot | ||
view details |
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2.1 | 11-124 | 114 | 1-5, 126-131 | 6-10, 125-125 | 5 | 6 | slipknot | |||
view details |
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3.1 | 25-114 | 90 | 1-15, 122-131 | 16-24, 115-121 | 15 | 10 | slipknot |
sequence length |
131
|
structure length |
131
|
publication title |
Crystal Structures of Rbsd Leading to the Identification of Cytoplasmic Sugar-Binding Proteins with a Novel Folding Architecture
pubmed doi rcsb |
molecule tags |
Transport
|
molecule keywords |
HIGH AFFINITY RIBOSE TRANSPORT PROTEIN RBSD
|
total genus |
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ec nomenclature |
ec
5.4.99.62: D-ribose pyranase. |
pdb deposition date | 2003-04-30 |
KnotProt deposition date | 2014-08-18 |
chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
---|---|---|---|
A | PF05025 | RbsD_FucU | RbsD / FucU transport protein family |
cath code
| Class | Architecture | Topology | Homology | Domain |
---|---|---|---|---|---|
Alpha Beta | 3-Layer(aba) Sandwich | RbsD-like fold | RbsD-like domain |
#chains in the KnotProt database with same CATH superfamily 1OGD A; 2WCU A; 2WCV A; 3P12 A; 1OGE A; 3P13 A; 1OGF A; 3MVK A; 2OB5 A; 1OGC A; 4A34 A; 3E7N A; #chains in the KnotProt database with same CATH topology 1OGD A; 2WCU A; 2WCV A; 3P12 A; 1OGE A; 3P13 A; 1OGF A; 3MVK A; 2OB5 A; 1OGC A; 4A34 A; 3E7N A; #chains in the KnotProt database with same CATH homology 1OGD A; 2WCU A; 2WCV A; 3P12 A; 1OGE A; 3P13 A; 1OGF A; 3MVK A; 2OB5 A; 1OGC A; 4A34 A; 3E7N A;
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...