| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 20-113 | 94 | 1-19 | 122-130 | 114-121 | 19 | 9 | slipknot |
Chain Sequence |
AVLNEHISKAIATIGHFDLLTINDAGMPIPNDHRRIDLAVTKNLPRFIDVLATVLEEMEIQKIYLAEEIKEHNPTQLQQIKQLISSEIEIIFIPHEEMKSNLAHPLNKGNIRTGETTPYSNIALESNVTF
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
2.1 | 10-111 | 102 | 1-9 | 116-130 | 112-115 | 9 | 15 | slipknot | ||
| view details |
|
2.1 | 7-118 | 112 | 1-6 | 124-130 | 119-123 | 6 | 7 | slipknot | ||
| view details |
 |
3.1 | 20-113 | 94 | 1-3, 121-130 | 4-19, 114-120 | 3 | 10 | slipknot |
| sequence length |
130
|
| structure length |
130
|
| publication title |
Crystal structure of Sa240: A ribose pyranase homolog with partial active site from Staphylococcus aureus
pubmed doi rcsb |
| molecule tags |
Isomerase
|
| molecule keywords |
D-ribose pyranase
|
| source organism |
Staphylococcus aureus
|
| total genus |
 Genus: 42
|
| ec nomenclature |
ec
5.4.99.62: D-ribose pyranase. |
| pdb deposition date | 2010-09-29 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF05025 | RbsD_FucU | RbsD / FucU transport protein family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | RbsD-like fold | RbsD-like domain |
#chains in the KnotProt database with same CATH superfamily 3E7N A; 2WCU A; 1OGF A; 2WCV A; 3MVK A; 2OB5 A; 4A34 A; 3P12 A; 1OGC A; 1OGD A; 1OGE A; 3P13 A; #chains in the KnotProt database with same CATH topology 3E7N A; 2WCU A; 1OGF A; 2WCV A; 3MVK A; 2OB5 A; 4A34 A; 3P12 A; 1OGC A; 1OGD A; 1OGE A; 3P13 A; #chains in the KnotProt database with same CATH homology 3E7N A; 2WCU A; 1OGF A; 2WCV A; 3MVK A; 2OB5 A; 4A34 A; 3P12 A; 1OGC A; 1OGD A; 1OGE A; 3P13 A;
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
