| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 27-123 | 97 | 1-26 | 133-140 | 124-132 | 26 | 8 | slipknot |
Chain Sequence |
NAMKKGTVLNSEISSVISRLGHTDTLVVCDAGLPIPNSTARIDMALTQGVPSFMQVVDVVTREMQVEAAILATEIKQQNPQLHETLLTHLEQLQQHQGNTIKISYTTHEQFKKLTADSQAVIRSGECSPYANVILCAGVT
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
2.1 | 16-124 | 109 | 1-15 | 134-140 | 125-133 | 15 | 7 | slipknot | ||
| view details |
|
2.1 | 14-133 | 120 | 1-13 | 136-140 | 134-135 | 13 | 5 | slipknot | ||
| view details |
|
2.1 | 14-135 | 122 | 1-1, 137-140 | 2-13, 136-136 | 1 | 4 | slipknot | |||
| view details |
 |
3.1 | 24-124 | 101 | 1-15, 134-140 | 16-23, 125-133 | 15 | 7 | slipknot |
| sequence length |
140
|
| structure length |
140
|
| publication title |
Crystal structure of d-ribose high-affinity transport system from salmonella typhimurium lt2
rcsb |
| molecule tags |
Transport protein
|
| molecule keywords |
D-ribose high-affinity transport system
|
| source organism |
Salmonella typhimurium
|
| total genus |
 Genus: 49
|
| ec nomenclature |
ec
5.4.99.62: D-ribose pyranase. |
| pdb deposition date | 2008-08-18 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF05025 | RbsD_FucU | RbsD / FucU transport protein family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | RbsD-like fold | RbsD-like domain |
#chains in the KnotProt database with same CATH superfamily 3E7N A; 2WCU A; 1OGF A; 2WCV A; 3MVK A; 2OB5 A; 4A34 A; 3P12 A; 1OGC A; 1OGD A; 1OGE A; 3P13 A; #chains in the KnotProt database with same CATH topology 3E7N A; 2WCU A; 1OGF A; 2WCV A; 3MVK A; 2OB5 A; 4A34 A; 3P12 A; 1OGC A; 1OGD A; 1OGE A; 3P13 A; #chains in the KnotProt database with same CATH homology 3E7N A; 2WCU A; 1OGF A; 2WCV A; 3MVK A; 2OB5 A; 4A34 A; 3P12 A; 1OGC A; 1OGD A; 1OGE A; 3P13 A;
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
