| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 22-122 | 101 | 1-21 | 134-140 | 123-133 | 21 | 7 | slipknot |
Chain Sequence |
IPKIIPPELLKVLCEMGHGDQLVIADGNFPAESIGKNAIVVRMDGHGGGEILKAILTVFPLDTYVDKPATLMEKVPGDTVATPIWDVYAGLIKEHDERGADAIGSLERFAFYEQAKNAYCVIASGESAQYANLILQKGVV
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
3.1 | 21-124 | 104 | 1-20 | 132-140 | 125-131 | 20 | 9 | slipknot | ||
| view details |
|
3.1 | 9-131 | 123 | 1-8 | 136-140 | 132-135 | 8 | 5 | slipknot | ||
| view details |
 |
2.1 | 16-131 | 116 | 1-8, 136-140 | 9-15, 132-135 | 8 | 5 | slipknot | |||
| view details |
|
2.1 | 19-122 | 104 | 1-10, 125-140 | 11-18, 123-124 | 10 | 16 | slipknot | |||
| view details |
|
2.1 | 20-122 | 103 | 1-18, 125-140 | 19-19, 123-124 | 18 | 16 | slipknot |
| sequence length |
140
|
| structure length |
140
|
| publication title |
The Crystal Structure of FucU from Bifidobacterium longum to 1.65A
rcsb |
| molecule tags |
Isomerase
|
| molecule keywords |
protein FucU
|
| source organism |
Bifidobacterium longum subsp. infantis
|
| total genus |
 Genus: 41
|
| ec nomenclature | |
| pdb deposition date | 2010-05-04 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF05025 | RbsD_FucU | RbsD / FucU transport protein family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | RbsD-like fold | RbsD-like domain |
#chains in the KnotProt database with same CATH superfamily 3MVK A; 2OB5 A; 2WCU A; 1OGC A; 3P12 A; 3E7N A; 4A34 A; 1OGF A; 2WCV A; 1OGE A; 1OGD A; 3P13 A; #chains in the KnotProt database with same CATH topology 3MVK A; 2OB5 A; 2WCU A; 1OGC A; 3P12 A; 3E7N A; 4A34 A; 1OGF A; 2WCV A; 1OGE A; 1OGD A; 3P13 A; #chains in the KnotProt database with same CATH homology 3MVK A; 2OB5 A; 2WCU A; 1OGC A; 3P12 A; 3E7N A; 4A34 A; 1OGF A; 2WCV A; 1OGE A; 1OGD A; 3P13 A;
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
