| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 20-113 | 94 | 1-19 | 121-129 | 114-120 | 19 | 9 | slipknot |
Chain Sequence |
VLNEHISKAIATIGHFDLLTINDAGMPIPNDHRRIDLAVTKNLPRFIDVLATVLEEMEIQKIYLAEEIKEHNPTQLQQIKQLISSEIEIIFIPHEEMKSNLAHPLNKGNIRTGETTPYSNIALESNVTF
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
3.1 | 15-112 | 98 | 1-14 | 120-129 | 113-119 | 14 | 10 | slipknot | ||
| view details |
|
3.1 | 13-119 | 107 | 1-1, 122-129 | 2-12, 120-121 | 1 | 8 | slipknot | |||
| view details |
|
3.1 | 19-112 | 94 | 1-14, 120-129 | 15-18, 113-119 | 14 | 10 | slipknot |
| sequence length |
129
|
| structure length |
129
|
| publication title |
Crystal structure of Sa240: A ribose pyranase homolog with partial active site from Staphylococcus aureus
pubmed doi rcsb |
| molecule tags |
Isomerase
|
| molecule keywords |
D-ribose pyranase
|
| source organism |
Staphylococcus aureus
|
| total genus |
 Genus: 40
|
| ec nomenclature |
ec
5.4.99.62: D-ribose pyranase. |
| pdb deposition date | 2010-09-29 |
| KnotProt deposition date | 2014-08-20 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF05025 | RbsD_FucU | RbsD / FucU transport protein family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | RbsD-like fold | RbsD-like domain |
#chains in the KnotProt database with same CATH superfamily 3P13 A; 1OGE A; 1OGF A; 4A34 A; 2OB5 A; 2WCV A; 3P12 A; 3E7N A; 1OGC A; 3MVK A; 1OGD A; 2WCU A; #chains in the KnotProt database with same CATH topology 3P13 A; 1OGE A; 1OGF A; 4A34 A; 2OB5 A; 2WCV A; 3P12 A; 3E7N A; 1OGC A; 3MVK A; 1OGD A; 2WCU A; #chains in the KnotProt database with same CATH homology 3P13 A; 1OGE A; 1OGF A; 4A34 A; 2OB5 A; 2WCV A; 3P12 A; 3E7N A; 1OGC A; 3MVK A; 1OGD A; 2WCU A;
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
