KnotProt 2.0: A database of proteins with knots and slipknots

Found 57 chains in Knotted chains table. Displaying 1 - 57. Applied filters: Probabilistic

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Knots
Knotoids

Search results query: topological notation:

#pdbid|chain|deposition date|is S/K-not|(slip)knot types;
      
  6nbq|F|2019-09-02|K|+3.1;
  4v4p|AM|2018-09-28|K|+3.1;
  5if3|A|2018-09-16|K|+3.1;
  6ee5|A|2018-09-13|K|+3.1;
  2r6e|A|2018-09-12|K|+3.1;
  3cmi|A|2018-09-12|K|+3.1;
  3qfh|D|2018-09-12|K|+3.1;
  3zxx|A|2018-09-12|K|+3.1;
  1gku|B|2018-09-12|K|+3.1;
  3psp|A|2018-09-12|K|+3.1;
  3gh2|X|2018-09-12|K|+3.1;
  5y3m|A|2018-04-18|K|+3.1;
  5vhi|E|2017-08-27|K|+3.1;
  5l9u|A|2016-09-19|K|+3.1;
  5ezt|X|2016-07-20|K|+3.1;
  5gao|E|2016-02-02|K|+3.1;
  4wzs|C|2015-08-26|K|+3.1;
  3wph|A|2015-02-11|K|+3.1;
  3wpg|A|2015-02-11|K|+3.1;
  3wpc|A|2015-02-11|K|+3.1;
  3wpi|A|2015-02-11|K|+3.1;
  1ml5|m|2014-10-08|K|+3.1;
  2ybb|n|2014-10-08|K|+3.1;
  1s1h|I|2014-10-08|K|+3.1;
  1vw1|A|2014-10-07|K|+3.1;
  4ux8|C|2014-10-04|K|+3.1;
  4nm3|A|2014-09-30|K|+3.1;
  3oc3|A|2014-09-29|K|+3.1;
  1w5c|X|2014-09-23|K|+3.1;
  3m9c|M|2014-09-23|K|+3.1;
  1t0j|B|2014-09-23|K|+3.1;
  2w4w|C|2014-09-23|K|+3.1;
  4mmz|A|2014-09-23|K|+3.1;
  3m9s|M|2014-09-23|K|+3.1;
  4mmy|A|2014-09-18|K|+3.1;
  3pvm|B|2014-09-03|K|+3.1;
  3ije|A|2014-08-22|K|+3.1;
  2pps|F|2014-08-20|K|+3.1;
  1bmf|G|2014-08-19|K|+3.1;
  1giy|M|2014-08-19|K|+3.1;
  1yl3|M|2014-08-19|K|+3.1;
  1cow|G|2014-08-19|K|+3.1;
  1e1r|G|2014-08-19|K|+3.1;
  1efr|G|2014-08-19|K|+3.1;
  1nbm|G|2014-08-19|K|+3.1;
  1qo1|G|2014-08-19|K|+3.1;
  1w0k|G|2014-08-19|K|+3.1;
  2w6f|G|2014-08-19|K|+3.1;
  2w6e|G|2014-08-19|K|+3.1;
  4cru|A|2014-08-13|K|+3.1;
  1eku|A|2014-07-31|K|+3.1;
  1he8|A|2014-07-31|K|+3.1;
  3iyk|A|2014-07-31|K|+3.1;
  3gbn|L|2014-07-31|K|+3.1;
  3e0j|A|2014-07-31|K|+3.1;
  1t0h|B|2014-07-31|K|+3.1;
  1m1x|A|2014-07-31|K|+3.1;

Knot types	Knot loop types		pdb	Title
K +3₁		₁	6nbqF	T.elongatus ndh (data-set 1)
K +3₁		₁	4v4pAM	Crystal structure of 70s ribosome with thrs operator and trnas.
K +3₁		₁	5if3A	Crystal structure of a short-chain dehydrogenase/reductase sdr from burkholderia vietnamiensis
K +3₁		₁	6ee5A	Reactive centre loop dynamics and serpin specificity
K +3₁		₁	2r6eA	Crystal form b2
K +3₁		₁	3cmiA	Crystal structure of glutathione-dependent phospholipid peroxidase hyr1 from the yeast saccharomyces cerevisiae
K +3₁			3qfhD	2.05 angstrom resolution crystal structure of epidermin leader peptide processing serine protease (epip) from staphylococcus aureus.
K +3₁	K 4x +3₁	₅	3zxxA	Structure of self-cleaved protease domain of pata
K +3₁	K 3x +3₁		1gkuB	Reverse gyrase from archaeoglobus fulgidus
K +3₁		₁	3pspA	Crystal structure of pul and pfu domain
K +3₁		₁	3gh2X	Replacement of val3 in human thymidylate synthase affects its kinetic properties and intracellular stability
K +3₁		₁	5y3mA	Crystal structure of bovine tlr9 in complex with two dnas (cpg dna and tcgttt dna)
K +3₁		₁	5vhiE	Conformational landscape of the p28-bound human proteasome regulatory particle
K +3₁		₁	5l9uA	Model of human anaphase-promoting complex/cyclosome (apc/c-cdh1) with a cross linked ubiquitin variant-substrate-ube2c (ubch10) complex representing key features of multiubiquitination
K +3₁		₁	5eztX	Peracetylated bovine carbonic anhydrase ii
K +3₁			5gaoE	Head region of the yeast spliceosomal u4/u6.u5 tri-snrnp
K +3₁		₁	4wzsC	Crystal structure of the mot1 n-terminal domain in complex with tbp and nc2 bound to a promoter dna fragment
K +3₁		₁	3wphA	Crystal structure of mouse tlr9 in complex with inhibitory dna4084 (form 2)
K +3₁		₁	3wpgA	Crystal structure of mouse tlr9 in complex with inhibitory dna4084 (form 1)
K +3₁		₁	3wpcA	Crystal structure of horse tlr9 in complex with agonistic dna1668_12mer
K +3₁		₁	3wpiA	Crystal structure of mouse tlr9 in complex with inhibitory dna_super
K +3₁		₁	1ml5m	Structure of the e. coli ribosomal termination complex with release factor 2
K +3₁			2ybbn	Fitted model for bovine mitochondrial supercomplex i1iii2iv1 by single particle cryo-em (emd-1876)
K +3₁			1s1hI	Structure of the ribosomal 80s-eef2-sordarin complex from yeast obtained by docking atomic models for rna and protein components into a 11.7 a cryo-em map. this file, 1s1h, contains 40s subunit. the 60s ribosomal subunit is in file 1s1i.
K +3₁		₁	1vw1A	Crystal structure of tcda1
K +3₁		₁	4ux8C	Ret recognition of gdnf-gfralpha1 ligand by a composite binding site promotes membrane-proximal self-association
K +3₁		₁	4nm3A	Crystal structure of gsk-3/axin complex bound to phosphorylated n-terminal auto-inhibitory ps9 peptide
K +3₁		₁	3oc3A	Crystal structure of the mot1 n-terminal domain in complex with tbp
K +3₁			1w5cX	Photosystem ii from thermosynechococcus elongatus
K +3₁			3m9cM	Crystal structure of the membrane domain of respiratory complex i from escherichia coli
K +3₁		₁	1t0jB	Crystal structure of a complex between voltage-gated calcium channel beta2a subunit and a peptide of the alpha1c subunit
K +3₁		₁	2w4wC	Isometrically contracting insect asynchronous flight muscle quick frozen after a quick stretch step
K +3₁		₁	4mmzA	Integrin alphavbeta3 ectodomain bound to an antagonistic tenth domain of fibronectin
K +3₁			3m9sM	Crystal structure of respiratory complex i from thermus thermophilus
K +3₁		₁	4mmyA	Integrin alphavbeta3 ectodomain bound to the tenth domain of fibronectin with the iakgdwnd motif
K +3₁		₁	3pvmB	Structure of complement c5 in complex with cvf
K +3₁		₁	3ijeA	Crystal structure of the complete integrin alhavbeta3 ectodomain plus an alpha/beta transmembrane fragment
K +3₁			2ppsF	Photosynthetic reaction center and core antenna system (trimeric), alpha carbon only
K +3₁		₁	1bmfG	Bovine mitochondrial f1-atpase
K +3₁		₁	1giyM	Crystal structure of the ribosome at 5.5 a resolution. this file, 1giy, contains the 50s ribosome subunit. the 30s ribosome subunit, three trna, and mrna molecules are in the file 1gix
K +3₁		₁	1yl3M	Crystal structure of 70s ribosome with thrs operator and trnas. large subunit. the coordinates for the small subunit are in the pdb entry 1yl4.
K +3₁		₁	1cowG	Bovine mitochondrial f1-atpase complexed with aurovertin b
K +3₁		₁	1e1rG	Bovine mitochondrial f1-atpase inhibited by mg2+adp and aluminium fluoride
K +3₁		₁	1efrG	Bovine mitochondrial f1-atpase complexed with the peptide antibiotic efrapeptin
K +3₁		₁	1nbmG	The structure of bovine f1-atpase covalently inhibited with 4-chloro-7-nitrobenzofurazan
K +3₁		₁	1qo1G	Molecular architecture of the rotary motor in atp synthase from yeast mitochondria
K +3₁		₁	1w0kG	Beryllium fluoride inhibited bovine f1-atpase
K +3₁		₁	2w6fG	Low resolution structures of bovine mitochondrial f1-atpase during controlled dehydration: hydration state 2.
K +3₁		₁	2w6eG	Low resolution structures of bovine mitochondrial f1-atpase during controlled dehydration: hydration state 1.
K +3₁		₁	4cruA	Complex of human cnot9 and cnot1 including one tryptophan
K +3₁		₁	1ekuA	Crystal structure of a biologically active single chain mutant of human ifn-gamma
K +3₁		₁	1he8A	Ras g12v - pi 3-kinase gamma complex
K +3₁		₁	3iykA	Bluetongue virus structure reveals a sialic acid binding domain, amphipathic helices and a central coiled coil in the outer capsid proteins
K +3₁		₁	3gbnL	Crystal structure of fab cr6261 in complex with the 1918 h1n1 influenza virus hemagglutinin
K +3₁		₁	3e0jA	X-ray structure of the complex of regulatory subunits of human dna polymerase delta
K +3₁		₁	1t0hB	Crystal structure of the rattus norvegicus voltage gated calcium channel beta subunit isoform 2a
K +3₁		₁	1m1xA	Crystal structure of the extracellular segment of integrin alpha vbeta3 bound to mn2+

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