KnotProt 2.0: A database of proteins with knots and slipknots

Found 52 chains in Knotoided chains table. Displaying 1 - 52. Applied filters: Probabilistic

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Knots
Knotoids

Search results query: topological notation for knotoids: K 3.1

#pdbid|chain|deposition date|is S/K-not|(slip)knot types;
      
  7e3t|A|2022-05-11|K|3.1;
  1ipa|A|2021-04-19|K|3.1;
  6rxx|CN|2020-04-09|K|3.1;
  6rxy|CN|2020-04-09|K|3.1;
  6rxv|CN|2020-04-09|K|3.1;
  6qrc|A|2019-10-18|K|3.1;
  6qrg|A|2019-10-18|K|3.1;
  5bu6|A|2018-10-20|K|3.1;
  1urt|A|2018-10-18|K|3.1;
  4v7h|BE|2018-09-28|K|3.1;
  5vm8|A|2018-09-13|K|3.1;
  6emt|A|2018-07-22|K|3.1;
  5jir|A|2018-06-12|K|3.1;
  4yqt|A|2018-06-11|K|3.1;
  1zjr|A|2018-06-11|K|3.1;
  1uak|A|2018-06-11|K|3.1;
  5wyq|A|2018-06-11|K|3.1;
  5wyk|E1|2018-06-11|K|3.1;
  5twj|A|2018-06-11|K|3.1;
  5o96|A|2018-06-11|K|3.1;
  5o95|A|2018-06-11|K|3.1;
  5nxi|A|2018-06-11|K|3.1;
  5dsp|A|2018-06-11|K|3.1;
  5c77|A|2018-06-11|K|3.1;
  5ap8|A|2018-06-11|K|3.1;
  4yvg|A|2018-06-11|K|3.1;
  3quv|A|2018-06-11|K|3.1;
  1lug|A|2018-06-11|K|3.1;
  1p9p|A|2018-06-11|K|3.1;
  2o3a|A|2018-06-11|K|3.1;
  2yy8|A|2018-06-11|K|3.1;
  3ai9|X|2018-06-11|K|3.1;
  3aia|A|2018-06-11|K|3.1;
  3axz|A|2018-06-11|K|3.1;
  3bbh|A|2018-06-11|K|3.1;
  3ief|A|2018-06-11|K|3.1;
  3jxf|A|2018-06-11|K|3.1;
  3n4j|A|2018-06-11|K|3.1;
  3oii|A|2018-06-11|K|3.1;
  4h3y|A|2018-06-11|K|3.1;
  4h3z|A|2018-06-11|K|3.1;
  4j3c|A|2018-06-11|K|3.1;
  4mcb|A|2018-06-11|K|3.1;
  4mcc|A|2018-06-11|K|3.1;
  4mcd|A|2018-06-11|K|3.1;
  4pzk|B|2018-06-11|K|3.1;
  4rg1|A|2018-06-11|K|3.1;
  4x3l|A|2018-06-11|K|3.1;
  4xbo|A|2018-06-11|K|3.1;
  4yqr|A|2018-06-11|K|3.1;
  4yqs|A|2018-06-11|K|3.1;
  5ife|D|2018-06-08|K|3.1;

Knotoid types		pdb	Title
K 3.1		7e3tA	Crystal structure of trml from mycoplasma capricolum
K 3.1		1ipaA	Crystal structure of rna 2'-o ribose methyltransferase
K 3.1	₁	6rxxCN	Cryo-em structure of the 90s pre-ribosome (kre33-noc4) from chaetomium thermophilum, state c, poly-ala
K 3.1	₁	6rxyCN	Cryo-em structure of the 90s pre-ribosome (kre33-noc4) from chaetomium thermophilum, state a
K 3.1	₁	6rxvCN	Cryo-em structure of the 90s pre-ribosome (kre33-noc4) from chaetomium thermophilum, state b2
K 3.1		6qrcA	Crystal structure of trmd, a trna-(n1g37) methyltransferase, from mycobacterium abscessus in complex with inhibitor
K 3.1		6qrgA	Crystal structure of trmd, a trna-(n1g37) methyltransferase, from mycobacterium abscessus in complex with inhibitor
K 3.1		5bu6A	Structure of bpsb deaceylase domain from bordetella bronchiseptica
K 3.1		1urtA	Murine carbonic anhydrase v
K 3.1		4v7hBE	Structure of the 80s rrna and proteins and p/e trna for eukaryotic ribosome based on cryo-em map of thermomyces lanuginosus ribosome at 8.9a resolution
K 3.1		5vm8A	Crystal structure of a ribosomal rna small subunit methyltransferase e from neisseria gonorrhoeae bound to s-adenosyl methionine
K 3.1	₁	6emtA	Crystal structure of dual specific trm10 construct from thermococcus kodakaraensis.
K 3.1		5jirA	Crystal structure of treponema pallidum protein tp0624
K 3.1		4yqtA	Crystal structure of trmd, a m1g37 trna methyltransferase with sam-competitive compounds
K 3.1		1zjrA	Crystal structure of a. aeolicus trmh/spou trna modifying enzyme
K 3.1		1uakA	Crystal structure of trna(m1g37)methyltransferase: insight into trna recognition
K 3.1		5wyqA	Crystal structure and catalytic mechanism of the essential m1g37 trna methyltransferase trmd from pseudomonas aeruginosa
K 3.1		5wykE1	Cryo-em structure of the 90s small subunit pre-ribosome (mtr4-depleted, enp1-tap)
K 3.1		5twjA	Crystal structure of rlmh in complex with s-adenosylmethionine
K 3.1		5o96A	Structure of the putative methyltransferase lpg2936 from legionella pneumophila in complex with the bound cofactor sam
K 3.1		5o95A	Structure of the putative methyltransferase lpg2936 from legionella pneumophila
K 3.1		5nxiA	Carbonic anhydrase ii inhibitor ra2
K 3.1		5dspA	Structure of co2 released apo-form of human carbonic anhydrase ii with 40 sec warming
K 3.1		5c77A	A novel protein arginine methyltransferase
K 3.1		5ap8A	Structure of the sam-dependent rrna:acp-transferase tsr3 from s. solfataricus
K 3.1		4yvgA	Crystal structure of h. influenzae trmd in complex with adomet
K 3.1		3quvA	Crystal structure of a trna-guanine-n1-methyltransferase from mycobacterium abscessus
K 3.1		1lugA	Full matrix error analysis of carbonic anhydrase
K 3.1		1p9pA	The crystal structure of a m1g37 trna methyltransferase, trmd
K 3.1	₁	2o3aA	Crystal structure of a protein af_0751 from archaeoglobus fulgidus
K 3.1		2yy8A	Crystal structure of archaeal trna-methylase for position 56 (atrm56) from pyrococcus horikoshii, complexed with s-adenosyl-l-methionine
K 3.1		3ai9X	Crystal structure of duf358 protein reveals a putative spout-class rrna methyltransferase
K 3.1		3aiaA	Crystal structure of duf358 reveals a putative spout-class methltransferase
K 3.1		3axzA	Crystal structure of haemophilus influenzae trmd in complex with adenosine
K 3.1		3bbhA	M. jannaschii nep1 complexed with sinefungin
K 3.1		3iefA	Crystal structure of trna guanine-n1-methyltransferase from bartonella henselae using mpcs.
K 3.1		3jxfA	Ca-like domain of human ptprz
K 3.1		3n4jA	Putative rna methyltransferase from yersinia pestis
K 3.1		3oiiA	Crystal structure of saccharomyces cerevisiae nep1/emg1 bound to s-adenosylhomocysteine
K 3.1		4h3yA	Crystal structure of an asymmetric dimer of a trna (guanine-(n(1)-)-methyltransferase from burkholderia phymatum bound to s-adenosyl homocystein in one half-site
K 3.1		4h3zA	Crystal structure of a symmetric dimer of a trna (guanine-(n(1)-)-methyltransferase from burkholderia phymatum bound to s-adenosyl homocystein in both half-sites
K 3.1	₄	4j3cA	Crystal structure of 16s ribosomal rna methyltransferase rsme
K 3.1		4mcbA	H.influenzae trmd in complex with n-(4-{[(1h-imidazol-2-ylmethyl)amino]methyl}benzyl)-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidine-5-carboxamide
K 3.1		4mccA	Hintrmd in complex with n-[4-(aminomethyl)benzyl]-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidine-5-carboxamide
K 3.1		4mcdA	Hintrmd in complex with 5-phenylthieno[2,3-d]pyrimidin-4(3h)-one
K 3.1		4pzkB	Crystal strucrure of putative rna methyltransferase from bacillus anthracis.
K 3.1		4rg1A	Methyltransferase domain of c9orf114
K 3.1		4x3lA	Crystal structure of ttha0275 from thermus thermophilus (hb8) in complex with 5'-methylthioadenosine in space group p21212
K 3.1		4xboA	Crystal structure of full length e.coli trmj in complex with sah
K 3.1		4yqrA	Crystal structure of trmd, a m1g37 trna methyltransferase with sam-competitive compounds
K 3.1		4yqsA	Crystal structure of trmd, a m1g37 trna methyltransferase with sam-competitive compounds
K 3.1		5ifeD	Crystal structure of the human sf3b core complex

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Search results query: topological notation for knotoids: K 3.1