3N4JA

Putative rna methyltransferase from yersinia pestis
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 84-125 42 1-83, 126-161 83 36 knot
Chain Sequence
AMLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHHHDYQAFLDSEKLDSTQPARLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPAYILDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQLGYPGALL
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 83-126 44 1-82, 127-161 82 35 knot
sequence length 161
structure length 161
publication title X-ray crystal structure of putative RNA methyltransferase from Yersinia pestis.
rcsb
molecule tags Transferase
molecule keywords RNA methyltransferase
source organism Yersinia pestis
total genus Genus: 52
ec nomenclature ec 2.1.1.207: tRNA (cytidine(34)-2'-O)-methyltransferase.
pdb deposition date 2010-05-21
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00588 SpoU_methylase SpoU rRNA Methylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 3n4jA00
4CNFB 1UAMA 1TO0A 4FAKA 4CNGB 3NK7A 2QWVA 3IC6A 3NK6A 1X7PA 1V6ZA 3KTYA 3AXZA 1GZ0A 3IEFA 3KY7A 1VH0A 1MXIA 3E5YA 3KNUA 1ZJRA 4CNEB 1UALA 1NXZA 4H3ZA 2YY8A 2CX8A 1O6DA 3GYQA 3ONPA 3N4JA 1UAKA 2I6DA 1UAJA 3N4KA 2HA8A 1P9PA 2QMMA 1VHKA 1J85A 1V2XA 3AIAA 1K3RA 3AI9X 1VHYA 4E8BA 4H3YA 3ILKA 3QUVA 4IG6A 3DCMX 3L8UA 2Z0YA 2O3AA 1X7OA 1NS5A
chains in the KnotProt database with same CATH superfamily
4CNFB 1UAMA 1TO0A 4FAKA 4CNGB 3NK7A 2QWVA 3IC6A 3NK6A 1X7PA 1V6ZA 3KTYA 3AXZA 1GZ0A 3IEFA 3KY7A 1VH0A 1MXIA 3E5YA 3KNUA 1ZJRA 4CNEB 1UALA 1NXZA 4H3ZA 2YY8A 2CX8A 1O6DA 3GYQA 3ONPA 3N4JA 1UAKA 2I6DA 1UAJA 3N4KA 2HA8A 1P9PA 2QMMA 1VHKA 1J85A 1V2XA 3AIAA 1K3RA 3AI9X 1VHYA 4E8BA 4H3YA 3ILKA 3QUVA 4IG6A 3DCMX 3L8UA 2Z0YA 2O3AA 1X7OA 1NS5A
chains in the KnotProt database with same CATH topology
4CNFB 1UAMA 1TO0A 4FAKA 4CNGB 3NK7A 2QWVA 3IC6A 3NK6A 1X7PA 1V6ZA 3KTYA 3AXZA 1GZ0A 3IEFA 3KY7A 1VH0A 1MXIA 3E5YA 3KNUA 1ZJRA 4CNEB 1UALA 1NXZA 4H3ZA 2YY8A 2CX8A 1O6DA 3GYQA 3ONPA 3N4JA 1UAKA 2I6DA 1UAJA 3N4KA 2HA8A 1P9PA 2QMMA 1VHKA 1J85A 1V2XA 3AIAA 1K3RA 3AI9X 1VHYA 4E8BA 4H3YA 3ILKA 3QUVA 4IG6A 3DCMX 3L8UA 2Z0YA 2O3AA 1X7OA 1NS5A
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 4CNF B;  1UAM A;  1TO0 A;  4FAK A;  4CNG B;  3NK7 A;  2QWV A;  3IC6 A;  3NK6 A;  1X7P A;  1V6Z A;  3KTY A;  3AXZ A;  1GZ0 A;  3IEF A;  3KY7 A;  1VH0 A;  1MXI A;  3E5Y A;  3KNU A;  1ZJR A;  4CNE B;  1UAL A;  1NXZ A;  4H3Z A;  2YY8 A;  2CX8 A;  1O6D A;  3GYQ A;  3ONP A;  3N4J A;  1UAK A;  2I6D A;  1UAJ A;  3N4K A;  2HA8 A;  1P9P A;  2QMM A;  1VHK A;  1J85 A;  1V2X A;  3AIA A;  1K3R A;  3AI9 X;  1VHY A;  4E8B A;  4H3Y A;  3ILK A;  3QUV A;  4IG6 A;  3DCM X;  3L8U A;  2Z0Y A;  2O3A A;  1X7O A;  1NS5 A; 
#chains in the KnotProt database with same CATH topology
 4CNF B;  1UAM A;  1TO0 A;  4FAK A;  4CNG B;  3NK7 A;  2QWV A;  3IC6 A;  3NK6 A;  1X7P A;  1V6Z A;  3KTY A;  3AXZ A;  1GZ0 A;  3IEF A;  3KY7 A;  1VH0 A;  1MXI A;  3E5Y A;  3KNU A;  1ZJR A;  4CNE B;  1UAL A;  1NXZ A;  4H3Z A;  2YY8 A;  2CX8 A;  1O6D A;  3GYQ A;  3ONP A;  3N4J A;  1UAK A;  2I6D A;  1UAJ A;  3N4K A;  2HA8 A;  1P9P A;  2QMM A;  1VHK A;  1J85 A;  1V2X A;  3AIA A;  1K3R A;  3AI9 X;  1VHY A;  4E8B A;  4H3Y A;  3ILK A;  3QUV A;  4IG6 A;  3DCM X;  3L8U A;  2Z0Y A;  2O3A A;  1X7O A;  1NS5 A; 
#chains in the KnotProt database with same CATH homology
 4CNF B;  1UAM A;  1TO0 A;  4FAK A;  4CNG B;  3NK7 A;  2QWV A;  3IC6 A;  3NK6 A;  1X7P A;  1V6Z A;  3KTY A;  3AXZ A;  1GZ0 A;  3IEF A;  3KY7 A;  1VH0 A;  1MXI A;  3E5Y A;  3KNU A;  1ZJR A;  4CNE B;  1UAL A;  1NXZ A;  4H3Z A;  2YY8 A;  2CX8 A;  1O6D A;  3GYQ A;  3ONP A;  3N4J A;  1UAK A;  2I6D A;  1UAJ A;  3N4K A;  2HA8 A;  1P9P A;  2QMM A;  1VHK A;  1J85 A;  1V2X A;  3AIA A;  1K3R A;  3AI9 X;  1VHY A;  4E8B A;  4H3Y A;  3ILK A;  3QUV A;  4IG6 A;  3DCM X;  3L8U A;  2Z0Y A;  2O3A A;  1X7O A;  1NS5 A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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