1ZJRA

Crystal structure of a. aeolicus trmh/spou trna modifying enzyme
Warning
  • Chain breaks within knotoid 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knotoid 41 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knotoid 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knotoid 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knotoid 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knotoid 41 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knotoid 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knotoid 41 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knotoid 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knotoid 41 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knotoid 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knotoid 41 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knotoid 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knotoid 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knotoid 41 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knotoid 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knotoid 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knotoid 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knotoid 41 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knotoid 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knotoid 41 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knotoid 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knotoid 41 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knotoid 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knotoid 41 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knotoid 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knotoid 41 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knotoid 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knotoid 52 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knotoid 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 69
Knot K +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 97-138 42 1-96, 139-197 96 59 knot
Chain Sequence
LVLEKRLKRLREVLEKRQKDLIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHAEGKKAKINEGITQGSHKWVFIEKVDNPVQKLLEFKNRGFQIVATWLSKESVNFREVDYTKPTVLVVGNELQGVSPEIVEIADKKIVIPMYGMAQSLNVSVATGIILYEAQRQREEKGMYSRPSLSEEEIQKILKKWAYEDVIK
Whole chain analysis

  Help Knotoid data interpretation Full screen
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


  Help Knotoid subchains data interpretation Full screen
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 96-139 44 1-95, 140-197 95 58 knot
view details
3.1 97-142 46 1-95, 192-197 96-96, 143-191 95 6 slipknot
sequence length 197
structure length 197
publication title Structure of a class II TrmH tRNA-modifying enzyme from Aquifex aeolicus.
pubmed doi rcsb
molecule tags Transferase
molecule keywords tRNA (Guanosine-2'-O-)-methyltransferase
source organism Aquifex aeolicus
total genus Genus: 69
ec nomenclature ec 2.1.1.34: tRNA (guanosine(18)-2'-O)-methyltransferase.
pdb deposition date 2005-04-30
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00588 SpoU_methylase SpoU rRNA Methylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 1zjrA00
1UAKA 2HA8A 1NXZA 3NK7A 1GZ0A 2QWVA 2YY8A 3AIAA 1UAMA 4CNGB 4FAKA 3AXZA 1MXIA 4H3YA 1UALA 3ONPA 3ILKA 3GYQA 3IC6A 3N4JA 2Z0YA 3QUVA 2O3AA 3E5YA 3IEFA 1X7PA 3AI9X 3KNUA 1V6ZA 1V2XA 2I6DA 1NS5A 1TO0A 1VHKA 3DCMX 1K3RA 1VH0A 1J85A 3NK6A 1ZJRA 1O6DA 4E8BA 1VHYA 2QMMA 4CNEB 1P9PA 3L8UA 1UAJA 3KY7A 4H3ZA 4IG6A 4CNFB 2CX8A 3KTYA 1X7OA 3N4KA
chains in the KnotProt database with same CATH superfamily
1UAKA 2HA8A 1NXZA 3NK7A 1GZ0A 2QWVA 2YY8A 3AIAA 1UAMA 4CNGB 4FAKA 3AXZA 1MXIA 4H3YA 1UALA 3ONPA 3ILKA 3GYQA 3IC6A 3N4JA 2Z0YA 3QUVA 2O3AA 3E5YA 3IEFA 1X7PA 3AI9X 3KNUA 1V6ZA 1V2XA 2I6DA 1NS5A 1TO0A 1VHKA 3DCMX 1K3RA 1VH0A 1J85A 3NK6A 1ZJRA 1O6DA 4E8BA 1VHYA 2QMMA 4CNEB 1P9PA 3L8UA 1UAJA 3KY7A 4H3ZA 4IG6A 4CNFB 2CX8A 3KTYA 1X7OA 3N4KA
chains in the KnotProt database with same CATH topology
1UAKA 2HA8A 1NXZA 3NK7A 1GZ0A 2QWVA 2YY8A 3AIAA 1UAMA 4CNGB 4FAKA 3AXZA 1MXIA 4H3YA 1UALA 3ONPA 3ILKA 3GYQA 3IC6A 3N4JA 2Z0YA 3QUVA 2O3AA 3E5YA 3IEFA 1X7PA 3AI9X 3KNUA 1V6ZA 1V2XA 2I6DA 1NS5A 1TO0A 1VHKA 3DCMX 1K3RA 1VH0A 1J85A 3NK6A 1ZJRA 1O6DA 4E8BA 1VHYA 2QMMA 4CNEB 1P9PA 3L8UA 1UAJA 3KY7A 4H3ZA 4IG6A 4CNFB 2CX8A 3KTYA 1X7OA 3N4KA
chains in the KnotProt database with same CATH homology

  
#chains in the KnotProt database with same CATH superfamily
 1UAK A;  2HA8 A;  1NXZ A;  3NK7 A;  1GZ0 A;  2QWV A;  2YY8 A;  3AIA A;  1UAM A;  4CNG B;  4FAK A;  3AXZ A;  1MXI A;  4H3Y A;  1UAL A;  3ONP A;  3ILK A;  3GYQ A;  3IC6 A;  3N4J A;  2Z0Y A;  3QUV A;  2O3A A;  3E5Y A;  3IEF A;  1X7P A;  3AI9 X;  3KNU A;  1V6Z A;  1V2X A;  2I6D A;  1NS5 A;  1TO0 A;  1VHK A;  3DCM X;  1K3R A;  1VH0 A;  1J85 A;  3NK6 A;  1ZJR A;  1O6D A;  4E8B A;  1VHY A;  2QMM A;  4CNE B;  1P9P A;  3L8U A;  1UAJ A;  3KY7 A;  4H3Z A;  4IG6 A;  4CNF B;  2CX8 A;  3KTY A;  1X7O A;  3N4K A; 
#chains in the KnotProt database with same CATH topology
 1UAK A;  2HA8 A;  1NXZ A;  3NK7 A;  1GZ0 A;  2QWV A;  2YY8 A;  3AIA A;  1UAM A;  4CNG B;  4FAK A;  3AXZ A;  1MXI A;  4H3Y A;  1UAL A;  3ONP A;  3ILK A;  3GYQ A;  3IC6 A;  3N4J A;  2Z0Y A;  3QUV A;  2O3A A;  3E5Y A;  3IEF A;  1X7P A;  3AI9 X;  3KNU A;  1V6Z A;  1V2X A;  2I6D A;  1NS5 A;  1TO0 A;  1VHK A;  3DCM X;  1K3R A;  1VH0 A;  1J85 A;  3NK6 A;  1ZJR A;  1O6D A;  4E8B A;  1VHY A;  2QMM A;  4CNE B;  1P9P A;  3L8U A;  1UAJ A;  3KY7 A;  4H3Z A;  4IG6 A;  4CNF B;  2CX8 A;  3KTY A;  1X7O A;  3N4K A; 
#chains in the KnotProt database with same CATH homology
 1UAK A;  2HA8 A;  1NXZ A;  3NK7 A;  1GZ0 A;  2QWV A;  2YY8 A;  3AIA A;  1UAM A;  4CNG B;  4FAK A;  3AXZ A;  1MXI A;  4H3Y A;  1UAL A;  3ONP A;  3ILK A;  3GYQ A;  3IC6 A;  3N4J A;  2Z0Y A;  3QUV A;  2O3A A;  3E5Y A;  3IEF A;  1X7P A;  3AI9 X;  3KNU A;  1V6Z A;  1V2X A;  2I6D A;  1NS5 A;  1TO0 A;  1VHK A;  3DCM X;  1K3R A;  1VH0 A;  1J85 A;  3NK6 A;  1ZJR A;  1O6D A;  4E8B A;  1VHY A;  2QMM A;  4CNE B;  1P9P A;  3L8U A;  1UAJ A;  3KY7 A;  4H3Z A;  4IG6 A;  4CNF B;  2CX8 A;  3KTY A;  1X7O A;  3N4K A;
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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