KnotProt 2.0: A database of proteins with knots and slipknots

Found 21 chains in Knotoided chains table. Displaying 1 - 21. Applied filters: Probabilistic

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Knots
Knotoids

Search results query: topological notation for knotoids: K 4.1, 3.2m

#pdbid|chain|deposition date|is S/K-not|(slip)knot types;
      
  6pu2|A|2019-10-24|K|4.1 3.2-;
  6ptx|A|2019-10-24|K|4.1 3.2-;
  6bao|A|2018-09-30|K|4.1 3.2-;
  5viv|A|2018-09-13|K|4.1 3.2-;
  5viq|A|2018-09-13|K|4.1 3.2-;
  4xtq|A|2018-09-12|K|4.1 3.2-;
  5c5k|A|2018-09-12|K|4.1 3.2-;
  4rq9|A|2018-09-06|K|4.1 3.2-;
  5nfx|A|2018-06-12|K|4.1 3.2-;
  5k5b|A|2018-06-12|K|4.1 3.2-;
  5vik|A|2018-06-11|K|4.1 3.2-;
  2vea|A|2018-06-11|K|4.1 3.2-;
  4y3i|A|2018-06-11|K|4.1 3.2-;
  4q0i|A|2018-06-11|K|4.1 3.2-;
  4o8g|A|2018-06-11|K|4.1 3.2-;
  4o0p|A|2018-06-11|K|4.1 3.2-;
  4o01|A|2018-06-11|K|4.1 3.2-;
  4cqh|A|2018-06-11|K|4.1 3.2-;
  3s7p|A|2018-06-11|K|4.1 3.2-;
  3s7o|A|2018-06-11|K|4.1 3.2-;
  3c2w|A|2018-06-11|K|4.1 3.2-;

Knotoid types		pdb	Title
K 4.1, 3.2m		6pu2A	Dark, mutant h275t , 100k, pcm myxobacterial phytochrome, p2
K 4.1, 3.2m		6ptxA	Dark, 100k, pcm myxobacterial phytochrome, p2, wild type,
K 4.1, 3.2m		6baoA	Stigmatella aurantiaca phytochrome photosensory core module, wild type
K 4.1, 3.2m	₄	5vivA	Crystal structure of monomeric near-infrared fluorescent protein mirfp670
K 4.1, 3.2m		5viqA	Crystal structure of monomeric near-infrared fluorescent protein mirfp709
K 4.1, 3.2m		4xtqA	Crystal structure of a mutant (c20s) of a near-infrared fluorescent protein bphp1-fp
K 4.1, 3.2m		5c5kA	Structure of the pfr form of a canonical phytochrome
K 4.1, 3.2m		4rq9A	Crystal structure of the chromophore-binding domain of stigmatella aurantiaca bacteriophytochrome (thr289his mutant) in the pr state
K 4.1, 3.2m	₆	5nfxA	Deinococcus radiodurans bphp pas-gaf y263f mutant
K 4.1, 3.2m	₇	5k5bA	Wild-type pas-gaf fragment from deinococcus radiodurans bphp
K 4.1, 3.2m		5vikA	Crystal structure of monomeric near-infrared fluorescent protein mirfp703
K 4.1, 3.2m	₅	2veaA	The complete sensory module of the cyanobacterial phytochrome cph1 in the pr-state.
K 4.1, 3.2m		4y3iA	Pas-gaf fragment from deinococcus radiodurans bphp assembled with bv - y307s, low dose
K 4.1, 3.2m	₆	4q0iA	Deinococcus radiodurans bphp pas-gaf d207a mutant
K 4.1, 3.2m	₆	4o8gA	Structure of infrared fluorescent protein 1.4
K 4.1, 3.2m	₄	4o0pA	Crystal structure of d. radiodurans bacteriophytochrome photosensory core module in its dark form
K 4.1, 3.2m	₄	4o01A	Crystal structure of d. radiodurans bacteriophytochrome photosensory core module in its illuminated form
K 4.1, 3.2m	₆	4cqhA	Structure of infrared fluorescent protein ifp2.0
K 4.1, 3.2m	₃	3s7pA	Crystal structure of the infrared fluorescent d207h variant of deinococcus bacteriophytochrome chromophore binding domain at 1.72 angstrom resolution
K 4.1, 3.2m	₆	3s7oA	Crystal structure of the infrared fluorescent d207h variant of deinococcus bacteriophytochrome chromophore binding domain at 1.24 angstrom resolution
K 4.1, 3.2m		3c2wA	Crystal structure of the photosensory core domain of p. aeruginosa bacteriophytochrome pabphp in the pfr state

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Search results query: topological notation for knotoids: K 4.1, 3.2m