1MG2B

Mutation of alpha phe55 of methylamine dehydrogenase alters the reorganization energy and electronic coupling for its electron transfer reaction with amicyanin
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Note, that the numbers in the matrix denote the consecutive residues in the loop, not the index of amino acids in the chain!
Knot K 1x +31

  Help Knotting data interpretation Full screen
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
+ 31 28-88 61 1-27, 89-98 27 10 knot
Fingerprint Knot forming loop Loop type
K +31 Thr7 ... Cys23 <-> Cys88 ... Cys61 <-> Cys29 ... Trq57 <-> Trp108 ...
Chain closureSer131 <-> Thr7
 probabilistic
Chain Sequence
TDPRAKWVPQDNDIQACDYWRHCSIDGNICDCSGGSLTNCPPGTKLATAS-VASCYNPTDGQSYLIAYRDCCGYNVSGRCPCLNTEGELPVYRPEFANDIIWCFGAEDDAMTYHCTISPIVGKAS
sequence length 125
structure length 124
publication title MUTATION OF AlPHA PHE55 OF METHYLAMINE DEHYDROGENASE ALTERS THE REORGANIZATION ENERGY AND ELECTRONIC COUPLING FOR ITS ELECTRON TRANSFER REACTION WITH AMICYANIN
pubmed doi rcsb
molecule tags Oxidoreductase
molecule keywords Methylamine dehydrogenase, heavy chain
source organism Paracoccus denitrificans
missing residues 51
total genus Genus: 34
ec nomenclature ec 1.4.9.1: Methylamine dehydrogenase (amicyanin).
pdb deposition date 2002-08-14
KnotProt deposition date 2018-10-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Electron Transport Ethylamine Dehydrogenase 1mg2B00
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Electron Transport Ethylamine Dehydrogenase 1mg2B00
2IURD 2AGYD 2IUVD 2BBKL 2OK4D 2Q7QD 2I0SD 2HJ4D 2J56L 2J55L 2H47B 2GC4B 2J57K 3L4OC 3C75L 2HKRD 2AH0D 2AGWD 2IAAB 2AGXD 2MTAL 1MG2B 2OJYD 1MDAM 2HXCD 2OIZD 2GC7B 2IUQD 2IUPD 1MG3B 2AGLD 2I0TD 2H3XB 2HJBD 2MADL 2AH1D 2HKMD
chains in the KnotProt database with same CATH superfamily
2IURD 2AGYD 2IUVD 2BBKL 2OK4D 2Q7QD 2I0SD 2HJ4D 2J56L 2J55L 2H47B 2GC4B 2J57K 3L4OC 3C75L 2HKRD 2AH0D 2AGWD 2IAAB 2AGXD 2MTAL 1MG2B 2OJYD 1MDAM 2HXCD 2OIZD 2GC7B 2IUQD 2IUPD 1MG3B 2AGLD 2I0TD 2H3XB 2HJBD 2MADL 2AH1D 2HKMD
chains in the KnotProt database with same CATH topology
2IURD 2AGYD 2IUVD 2BBKL 2OK4D 2Q7QD 2I0SD 2HJ4D 2J56L 2J55L 2H47B 2GC4B 2J57K 3L4OC 3C75L 2HKRD 2AH0D 2AGWD 2IAAB 2AGXD 2MTAL 1MG2B 2OJYD 1MDAM 2HXCD 2OIZD 2GC7B 2IUQD 2IUPD 1MG3B 2AGLD 2I0TD 2H3XB 2HJBD 2MADL 2AH1D 2HKMD
chains in the KnotProt database with same CATH homology

  
#chains in the KnotProt database with same CATH superfamily
 2IUR D;  2AGY D;  2IUV D;  2BBK L;  2OK4 D;  2Q7Q D;  2I0S D;  2HJ4 D;  2J56 L;  2J55 L;  2H47 B;  2GC4 B;  2J57 K;  3L4O C;  3C75 L;  2HKR D;  2AH0 D;  2AGW D;  2IAA B;  2AGX D;  2MTA L;  1MG2 B;  2OJY D;  1MDA M;  2HXC D;  2OIZ D;  2GC7 B;  2IUQ D;  2IUP D;  1MG3 B;  2AGL D;  2I0T D;  2H3X B;  2HJB D;  2MAD L;  2AH1 D;  2HKM D; 
#chains in the KnotProt database with same CATH topology
 2IUR D;  2AGY D;  2IUV D;  2BBK L;  2OK4 D;  2Q7Q D;  2I0S D;  2HJ4 D;  2J56 L;  2J55 L;  2H47 B;  2GC4 B;  2J57 K;  3L4O C;  3C75 L;  2HKR D;  2AH0 D;  2AGW D;  2IAA B;  2AGX D;  2MTA L;  1MG2 B;  2OJY D;  1MDA M;  2HXC D;  2OIZ D;  2GC7 B;  2IUQ D;  2IUP D;  1MG3 B;  2AGL D;  2I0T D;  2H3X B;  2HJB D;  2MAD L;  2AH1 D;  2HKM D; 
#chains in the KnotProt database with same CATH homology
 2IUR D;  2AGY D;  2IUV D;  2BBK L;  2OK4 D;  2Q7Q D;  2I0S D;  2HJ4 D;  2J56 L;  2J55 L;  2H47 B;  2GC4 B;  2J57 K;  3L4O C;  3C75 L;  2HKR D;  2AH0 D;  2AGW D;  2IAA B;  2AGX D;  2MTA L;  1MG2 B;  2OJY D;  1MDA M;  2HXC D;  2OIZ D;  2GC7 B;  2IUQ D;  2IUP D;  1MG3 B;  2AGL D;  2I0T D;  2H3X B;  2HJB D;  2MAD L;  2AH1 D;  2HKM D;
...loading similar chains, please wait...
similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...
How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling