2OJYD

Crystal structure of indol-3-acetaldehyde derived ttq-amide adduct of aromatic amine dehydrogenase
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Note, that the numbers in the matrix denote the consecutive residues in the loop, not the index of amino acids in the chain!
Knot K 1x +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
+ 31 16-75 60 1-15, 76-83 15 8 knot
Fingerprint Knot forming loop Loop type
K +31 Glu71 ... Cys75 <-> Cys140 ... Cys113 <-> Cys81 ... Trq109 <-> Trp160 ...
Chain closureAla180 <-> Glu71
probabilistic
Chain Sequence
EVNSCDYWRHCAVDGFLCSCCGGTTTTCPPGSTPSPIS-IGTCHNPHDGKDYLISYHDCCGKTACGRCQCNTQTRERPGYEFFLHNDVNWCMANENSTFHCTTSVLVGLA
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
sequence length 110
structure length 109
publication title New insights into the reductive half-reaction mechanism of aromatic amine dehydrogenase revealed by reaction with carbinolamine substrates.
pubmed doi rcsb
molecule tags Oxidoreductase
molecule keywords Aromatic amine dehydrogenase, small subunit
missing residues 39
total genus Genus: 28
ec nomenclature ec 1.4.9.2: Aralkylamine dehydrogenase (azurin).
pdb deposition date 2007-01-15
KnotProt deposition date 2018-10-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Electron Transport Ethylamine Dehydrogenase 2ojyD00
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Electron Transport Ethylamine Dehydrogenase 2ojyD00
2IUQD 2H47B 2I0SD 2IUVD 2H3XB 3L4OC 1MG2B 3C75L 2IUPD 2OIZD 1MDAM 2Q7QD 2OJYD 2AGXD 2OK4D 2AH1D 2HJBD 2HJ4D 2I0TD 2J56L 2GC4B 2IURD 2MTAL 2J55L 2HKMD 2BBKL 1MG3B 2HKRD 2MADL 2J57K 2AH0D 2AGYD 2IAAB 2AGWD 2GC7B 2HXCD 2AGLD
chains in the KnotProt database with same CATH superfamily
2IUQD 2H47B 2I0SD 2IUVD 2H3XB 3L4OC 1MG2B 3C75L 2IUPD 2OIZD 1MDAM 2Q7QD 2OJYD 2AGXD 2OK4D 2AH1D 2HJBD 2HJ4D 2I0TD 2J56L 2GC4B 2IURD 2MTAL 2J55L 2HKMD 2BBKL 1MG3B 2HKRD 2MADL 2J57K 2AH0D 2AGYD 2IAAB 2AGWD 2GC7B 2HXCD 2AGLD
chains in the KnotProt database with same CATH topology
2IUQD 2H47B 2I0SD 2IUVD 2H3XB 3L4OC 1MG2B 3C75L 2IUPD 2OIZD 1MDAM 2Q7QD 2OJYD 2AGXD 2OK4D 2AH1D 2HJBD 2HJ4D 2I0TD 2J56L 2GC4B 2IURD 2MTAL 2J55L 2HKMD 2BBKL 1MG3B 2HKRD 2MADL 2J57K 2AH0D 2AGYD 2IAAB 2AGWD 2GC7B 2HXCD 2AGLD
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 2IUQ D;  2H47 B;  2I0S D;  2IUV D;  2H3X B;  3L4O C;  1MG2 B;  3C75 L;  2IUP D;  2OIZ D;  1MDA M;  2Q7Q D;  2OJY D;  2AGX D;  2OK4 D;  2AH1 D;  2HJB D;  2HJ4 D;  2I0T D;  2J56 L;  2GC4 B;  2IUR D;  2MTA L;  2J55 L;  2HKM D;  2BBK L;  1MG3 B;  2HKR D;  2MAD L;  2J57 K;  2AH0 D;  2AGY D;  2IAA B;  2AGW D;  2GC7 B;  2HXC D;  2AGL D; 
#chains in the KnotProt database with same CATH topology
 2IUQ D;  2H47 B;  2I0S D;  2IUV D;  2H3X B;  3L4O C;  1MG2 B;  3C75 L;  2IUP D;  2OIZ D;  1MDA M;  2Q7Q D;  2OJY D;  2AGX D;  2OK4 D;  2AH1 D;  2HJB D;  2HJ4 D;  2I0T D;  2J56 L;  2GC4 B;  2IUR D;  2MTA L;  2J55 L;  2HKM D;  2BBK L;  1MG3 B;  2HKR D;  2MAD L;  2J57 K;  2AH0 D;  2AGY D;  2IAA B;  2AGW D;  2GC7 B;  2HXC D;  2AGL D; 
#chains in the KnotProt database with same CATH homology
 2IUQ D;  2H47 B;  2I0S D;  2IUV D;  2H3X B;  3L4O C;  1MG2 B;  3C75 L;  2IUP D;  2OIZ D;  1MDA M;  2Q7Q D;  2OJY D;  2AGX D;  2OK4 D;  2AH1 D;  2HJB D;  2HJ4 D;  2I0T D;  2J56 L;  2GC4 B;  2IUR D;  2MTA L;  2J55 L;  2HKM D;  2BBK L;  1MG3 B;  2HKR D;  2MAD L;  2J57 K;  2AH0 D;  2AGY D;  2IAA B;  2AGW D;  2GC7 B;  2HXC D;  2AGL D; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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