3C75L

Paracoccus versutus methylamine dehydrogenase in complex with amicyanin
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Note, that the numbers in the matrix denote the consecutive residues in the loop, not the index of amino acids in the chain!
Knot K 1x +31

  Help Knotting data interpretation Full screen
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
+ 31 28-88 61 1-27, 89-98 27 10 knot
Fingerprint Knot forming loop Loop type
K +31
Chain closureVal7 <-> Ser131
... Trp108 <-> Trq57 ... Cys29 <-> Cys61 ... Cys88 <-> Cys23 ... Val7		 probabilistic
Chain Sequence
VDPRAKWQPQDNDIQACDYWRHCSIDGNICDCSGGSLTNCPPGTKLATAS-VASCYNPTDGQSYLIAYRDCCGYNVSGRCPCLNTEGELPVYRPEFANDIIWCFGAEDDAMTYHCTISPIVGKAS
sequence length 125
structure length 124
publication title Structural comparison of crystal and solution states of the 138 kDa complex of methylamine dehydrogenase and amicyanin from Paracoccus versutus.
pubmed doi rcsb
molecule tags Oxidoreductase
molecule keywords Methylamine dehydrogenase heavy chain
missing residues 51
total genus Genus: 32
ec nomenclature ec 1.4.9.1: Methylamine dehydrogenase (amicyanin).
pdb deposition date 2008-02-06
KnotProt deposition date 2018-09-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Electron Transport Ethylamine Dehydrogenase 3c75L00
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Electron Transport Ethylamine Dehydrogenase 3c75L00
2AGLD 2AH0D 2H3XB 2MTAL 2AGYD 2IUVD 3L4OC 2IAAB 1MDAM 2MADL 2HXCD 2H47B 2AGXD 2OK4D 2J57K 2GC4B 2OJYD 2OIZD 2I0SD 2AH1D 2HJ4D 2J55L 1MG3B 2Q7QD 2AGWD 2IURD 2IUQD 2I0TD 2J56L 1MG2B 2HJBD 2HKMD 3C75L 2IUPD 2GC7B 2BBKL 2HKRD
chains in the KnotProt database with same CATH superfamily
2AGLD 2AH0D 2H3XB 2MTAL 2AGYD 2IUVD 3L4OC 2IAAB 1MDAM 2MADL 2HXCD 2H47B 2AGXD 2OK4D 2J57K 2GC4B 2OJYD 2OIZD 2I0SD 2AH1D 2HJ4D 2J55L 1MG3B 2Q7QD 2AGWD 2IURD 2IUQD 2I0TD 2J56L 1MG2B 2HJBD 2HKMD 3C75L 2IUPD 2GC7B 2BBKL 2HKRD
chains in the KnotProt database with same CATH topology
2AGLD 2AH0D 2H3XB 2MTAL 2AGYD 2IUVD 3L4OC 2IAAB 1MDAM 2MADL 2HXCD 2H47B 2AGXD 2OK4D 2J57K 2GC4B 2OJYD 2OIZD 2I0SD 2AH1D 2HJ4D 2J55L 1MG3B 2Q7QD 2AGWD 2IURD 2IUQD 2I0TD 2J56L 1MG2B 2HJBD 2HKMD 3C75L 2IUPD 2GC7B 2BBKL 2HKRD
chains in the KnotProt database with same CATH homology

  
#chains in the KnotProt database with same CATH superfamily
 2AGL D;  2AH0 D;  2H3X B;  2MTA L;  2AGY D;  2IUV D;  3L4O C;  2IAA B;  1MDA M;  2MAD L;  2HXC D;  2H47 B;  2AGX D;  2OK4 D;  2J57 K;  2GC4 B;  2OJY D;  2OIZ D;  2I0S D;  2AH1 D;  2HJ4 D;  2J55 L;  1MG3 B;  2Q7Q D;  2AGW D;  2IUR D;  2IUQ D;  2I0T D;  2J56 L;  1MG2 B;  2HJB D;  2HKM D;  3C75 L;  2IUP D;  2GC7 B;  2BBK L;  2HKR D; 
#chains in the KnotProt database with same CATH topology
 2AGL D;  2AH0 D;  2H3X B;  2MTA L;  2AGY D;  2IUV D;  3L4O C;  2IAA B;  1MDA M;  2MAD L;  2HXC D;  2H47 B;  2AGX D;  2OK4 D;  2J57 K;  2GC4 B;  2OJY D;  2OIZ D;  2I0S D;  2AH1 D;  2HJ4 D;  2J55 L;  1MG3 B;  2Q7Q D;  2AGW D;  2IUR D;  2IUQ D;  2I0T D;  2J56 L;  1MG2 B;  2HJB D;  2HKM D;  3C75 L;  2IUP D;  2GC7 B;  2BBK L;  2HKR D; 
#chains in the KnotProt database with same CATH homology
 2AGL D;  2AH0 D;  2H3X B;  2MTA L;  2AGY D;  2IUV D;  3L4O C;  2IAA B;  1MDA M;  2MAD L;  2HXC D;  2H47 B;  2AGX D;  2OK4 D;  2J57 K;  2GC4 B;  2OJY D;  2OIZ D;  2I0S D;  2AH1 D;  2HJ4 D;  2J55 L;  1MG3 B;  2Q7Q D;  2AGW D;  2IUR D;  2IUQ D;  2I0T D;  2J56 L;  1MG2 B;  2HJB D;  2HKM D;  3C75 L;  2IUP D;  2GC7 B;  2BBK L;  2HKR D;
...loading similar chains, please wait...
similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...
How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling