2AGLD

Crystal structure of the phenylhydrazine adduct of aromatic amine dehydrogenase from alcaligenes faecalis
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Note, that the numbers in the matrix denote the consecutive residues in the loop, not the index of amino acids in the chain!
Knot K 1x +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
+ 31 16-75 60 1-15, 76-82 15 7 knot
Fingerprint Knot forming loop Loop type
K +31 Glu71 ... Cys75 <-> Cys140 ... Cys113 <-> Cys81 ... Trq109 <-> Trp160 ...
Chain closureLeu179 <-> Glu71
 probabilistic
Chain Sequence
EVNSCDYWRHCAVDGFLCSCCGGTTTTCPPGSTPSPIS-IGTCHNPHDGKDYLISYHDCCGKTACGRCQCNTQTRERPGYEFFLHNDVNWCMANENSTFHCTTSVLVGL
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
sequence length 109
structure length 108
publication title Atomic description of an enzyme reaction dominated by proton tunneling
pubmed doi rcsb
molecule tags Oxidoreductase
molecule keywords Aromatic amine dehydrogenase
missing residues 39
total genus Genus: 26
ec nomenclature ec 1.4.9.2: Aralkylamine dehydrogenase (azurin).
pdb deposition date 2005-07-27
KnotProt deposition date 2018-10-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Electron Transport Ethylamine Dehydrogenase 2aglD00
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Electron Transport Ethylamine Dehydrogenase 2aglD00
2HXCD 3L4OC 2HJ4D 2J55L 1MG3B 2OJYD 1MG2B 2H3XB 2HJBD 2IAAB 2HKRD 2OIZD 2AH1D 2AGWD 2IURD 1MDAM 2IUVD 3C75L 2J56L 2H47B 2AH0D 2J57K 2AGLD 2I0TD 2AGXD 2GC7B 2GC4B 2AGYD 2Q7QD 2OK4D 2IUPD 2HKMD 2BBKL 2I0SD 2IUQD 2MTAL 2MADL
chains in the KnotProt database with same CATH superfamily
2HXCD 3L4OC 2HJ4D 2J55L 1MG3B 2OJYD 1MG2B 2H3XB 2HJBD 2IAAB 2HKRD 2OIZD 2AH1D 2AGWD 2IURD 1MDAM 2IUVD 3C75L 2J56L 2H47B 2AH0D 2J57K 2AGLD 2I0TD 2AGXD 2GC7B 2GC4B 2AGYD 2Q7QD 2OK4D 2IUPD 2HKMD 2BBKL 2I0SD 2IUQD 2MTAL 2MADL
chains in the KnotProt database with same CATH topology
2HXCD 3L4OC 2HJ4D 2J55L 1MG3B 2OJYD 1MG2B 2H3XB 2HJBD 2IAAB 2HKRD 2OIZD 2AH1D 2AGWD 2IURD 1MDAM 2IUVD 3C75L 2J56L 2H47B 2AH0D 2J57K 2AGLD 2I0TD 2AGXD 2GC7B 2GC4B 2AGYD 2Q7QD 2OK4D 2IUPD 2HKMD 2BBKL 2I0SD 2IUQD 2MTAL 2MADL
chains in the KnotProt database with same CATH homology

  
#chains in the KnotProt database with same CATH superfamily
 2HXC D;  3L4O C;  2HJ4 D;  2J55 L;  1MG3 B;  2OJY D;  1MG2 B;  2H3X B;  2HJB D;  2IAA B;  2HKR D;  2OIZ D;  2AH1 D;  2AGW D;  2IUR D;  1MDA M;  2IUV D;  3C75 L;  2J56 L;  2H47 B;  2AH0 D;  2J57 K;  2AGL D;  2I0T D;  2AGX D;  2GC7 B;  2GC4 B;  2AGY D;  2Q7Q D;  2OK4 D;  2IUP D;  2HKM D;  2BBK L;  2I0S D;  2IUQ D;  2MTA L;  2MAD L; 
#chains in the KnotProt database with same CATH topology
 2HXC D;  3L4O C;  2HJ4 D;  2J55 L;  1MG3 B;  2OJY D;  1MG2 B;  2H3X B;  2HJB D;  2IAA B;  2HKR D;  2OIZ D;  2AH1 D;  2AGW D;  2IUR D;  1MDA M;  2IUV D;  3C75 L;  2J56 L;  2H47 B;  2AH0 D;  2J57 K;  2AGL D;  2I0T D;  2AGX D;  2GC7 B;  2GC4 B;  2AGY D;  2Q7Q D;  2OK4 D;  2IUP D;  2HKM D;  2BBK L;  2I0S D;  2IUQ D;  2MTA L;  2MAD L; 
#chains in the KnotProt database with same CATH homology
 2HXC D;  3L4O C;  2HJ4 D;  2J55 L;  1MG3 B;  2OJY D;  1MG2 B;  2H3X B;  2HJB D;  2IAA B;  2HKR D;  2OIZ D;  2AH1 D;  2AGW D;  2IUR D;  1MDA M;  2IUV D;  3C75 L;  2J56 L;  2H47 B;  2AH0 D;  2J57 K;  2AGL D;  2I0T D;  2AGX D;  2GC7 B;  2GC4 B;  2AGY D;  2Q7Q D;  2OK4 D;  2IUP D;  2HKM D;  2BBK L;  2I0S D;  2IUQ D;  2MTA L;  2MAD L;
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling