2MADL

The active site structure of methylamine dehydrogenase: hydrazines identify c6 as the reactive site of the tryptophan derived quinone cofactor
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Note, that the numbers in the matrix denote the consecutive residues in the loop, not the index of amino acids in the chain!
Knot K 1x +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
+ 31 29-88 60 1-28, 89-97 28 9 knot
Fingerprint Knot forming loop Loop type
K +31
Chain closureVal7 <-> Ala130
... Trp108 <-> Trq57 ... Cys29 <-> Cys61 ... Cys88 <-> Cys23 ... Val7
probabilistic
Chain Sequence
VDPRAKWQPQDNDIQACDYWRHCSIDGNICDCSGGSLTNCPPGTKLATAS-VASCYNPTDGQSYLIAYRDCCGYNVSGRCPCLNTEGELPVYRPEFANDIIWCFGAEDDAMTYHCTISPIVGKA
missing residues 51
publication title Active site structure of methylamine dehydrogenase: hydrazines identify C6 as the reactive site of the tryptophan-derived quinone cofactor.
pubmed doi rcsb
structure length 123
molecule tags Oxidoreductase(chnh2(d)-deaminating)
source organism Paracoccus versutus
sequence length 124
total genus Genus: 29
molecule keywords METHYLAMINE DEHYDROGENASE (LIGHT SUBUNIT)
ec nomenclature ec 1.4.9.1: Methylamine dehydrogenase (amicyanin).
pdb deposition date 1992-05-20
KnotProt deposition date 2018-10-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Electron Transport Ethylamine Dehydrogenase 2madL00
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Electron Transport Ethylamine Dehydrogenase 2madL00
2J55L 1MG2B 2MTAL 2IUPD 2HKMD 2J56L 3C75L 2MADL 2GC7B 2H3XB 2H47B 2IURD 2AH1D 2OIZD 2AGWD 2AGYD 2GC4B 3L4OC 2BBKL 2OK4D 2HKRD 2HJBD 2Q7QD 2IAAB 2HJ4D 2J57K 2IUVD 2I0TD 2I0SD 2AGLD 2IUQD 2AH0D 1MDAM 2HXCD 2AGXD 2OJYD 1MG3B
chains in the KnotProt database with same CATH superfamily
2J55L 1MG2B 2MTAL 2IUPD 2HKMD 2J56L 3C75L 2MADL 2GC7B 2H3XB 2H47B 2IURD 2AH1D 2OIZD 2AGWD 2AGYD 2GC4B 3L4OC 2BBKL 2OK4D 2HKRD 2HJBD 2Q7QD 2IAAB 2HJ4D 2J57K 2IUVD 2I0TD 2I0SD 2AGLD 2IUQD 2AH0D 1MDAM 2HXCD 2AGXD 2OJYD 1MG3B
chains in the KnotProt database with same CATH topology
2J55L 1MG2B 2MTAL 2IUPD 2HKMD 2J56L 3C75L 2MADL 2GC7B 2H3XB 2H47B 2IURD 2AH1D 2OIZD 2AGWD 2AGYD 2GC4B 3L4OC 2BBKL 2OK4D 2HKRD 2HJBD 2Q7QD 2IAAB 2HJ4D 2J57K 2IUVD 2I0TD 2I0SD 2AGLD 2IUQD 2AH0D 1MDAM 2HXCD 2AGXD 2OJYD 1MG3B
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 2J55 L;  1MG2 B;  2MTA L;  2IUP D;  2HKM D;  2J56 L;  3C75 L;  2MAD L;  2GC7 B;  2H3X B;  2H47 B;  2IUR D;  2AH1 D;  2OIZ D;  2AGW D;  2AGY D;  2GC4 B;  3L4O C;  2BBK L;  2OK4 D;  2HKR D;  2HJB D;  2Q7Q D;  2IAA B;  2HJ4 D;  2J57 K;  2IUV D;  2I0T D;  2I0S D;  2AGL D;  2IUQ D;  2AH0 D;  1MDA M;  2HXC D;  2AGX D;  2OJY D;  1MG3 B; 
#chains in the KnotProt database with same CATH topology
 2J55 L;  1MG2 B;  2MTA L;  2IUP D;  2HKM D;  2J56 L;  3C75 L;  2MAD L;  2GC7 B;  2H3X B;  2H47 B;  2IUR D;  2AH1 D;  2OIZ D;  2AGW D;  2AGY D;  2GC4 B;  3L4O C;  2BBK L;  2OK4 D;  2HKR D;  2HJB D;  2Q7Q D;  2IAA B;  2HJ4 D;  2J57 K;  2IUV D;  2I0T D;  2I0S D;  2AGL D;  2IUQ D;  2AH0 D;  1MDA M;  2HXC D;  2AGX D;  2OJY D;  1MG3 B; 
#chains in the KnotProt database with same CATH homology
 2J55 L;  1MG2 B;  2MTA L;  2IUP D;  2HKM D;  2J56 L;  3C75 L;  2MAD L;  2GC7 B;  2H3X B;  2H47 B;  2IUR D;  2AH1 D;  2OIZ D;  2AGW D;  2AGY D;  2GC4 B;  3L4O C;  2BBK L;  2OK4 D;  2HKR D;  2HJB D;  2Q7Q D;  2IAA B;  2HJ4 D;  2J57 K;  2IUV D;  2I0T D;  2I0S D;  2AGL D;  2IUQ D;  2AH0 D;  1MDA M;  2HXC D;  2AGX D;  2OJY D;  1MG3 B; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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