3C75L

Paracoccus versutus methylamine dehydrogenase in complex with amicyanin
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Note, that the numbers in the matrix denote the consecutive residues in the loop, not the index of amino acids in the chain!
Knot K 1x +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
+ 31 28-88 61 1-27, 89-98 27 10 knot
Fingerprint Knot forming loop Loop type
K +31
Chain closureVal7 <-> Ser131
... Trp108 <-> Trq57 ... Cys29 <-> Cys61 ... Cys88 <-> Cys23 ... Val7		 probabilistic
Chain Sequence
VDPRAKWQPQDNDIQACDYWRHCSIDGNICDCSGGSLTNCPPGTKLATAS-VASCYNPTDGQSYLIAYRDCCGYNVSGRCPCLNTEGELPVYRPEFANDIIWCFGAEDDAMTYHCTISPIVGKAS
sequence length 125
structure length 124
publication title Structural comparison of crystal and solution states of the 138 kDa complex of methylamine dehydrogenase and amicyanin from Paracoccus versutus.
pubmed doi rcsb
molecule tags Oxidoreductase
molecule keywords Methylamine dehydrogenase heavy chain
missing residues 51
total genus Genus: 32
ec nomenclature ec 1.4.9.1: Methylamine dehydrogenase (amicyanin).
pdb deposition date 2008-02-06
KnotProt deposition date 2018-09-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Electron Transport Ethylamine Dehydrogenase 3c75L00
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Electron Transport Ethylamine Dehydrogenase 3c75L00
2MADL 2I0TD 2AGXD 1MG2B 1MDAM 3C75L 2MTAL 2H3XB 2HXCD 2IUQD 2J55L 2IUPD 2GC4B 2AH0D 2AGLD 3L4OC 2IURD 2AGWD 2J57K 2HJBD 2HKRD 2AH1D 2IUVD 2GC7B 2H47B 2HJ4D 2OK4D 2J56L 2I0SD 2Q7QD 2OIZD 2BBKL 2AGYD 2OJYD 1MG3B 2IAAB 2HKMD
chains in the KnotProt database with same CATH superfamily
2MADL 2I0TD 2AGXD 1MG2B 1MDAM 3C75L 2MTAL 2H3XB 2HXCD 2IUQD 2J55L 2IUPD 2GC4B 2AH0D 2AGLD 3L4OC 2IURD 2AGWD 2J57K 2HJBD 2HKRD 2AH1D 2IUVD 2GC7B 2H47B 2HJ4D 2OK4D 2J56L 2I0SD 2Q7QD 2OIZD 2BBKL 2AGYD 2OJYD 1MG3B 2IAAB 2HKMD
chains in the KnotProt database with same CATH topology
2MADL 2I0TD 2AGXD 1MG2B 1MDAM 3C75L 2MTAL 2H3XB 2HXCD 2IUQD 2J55L 2IUPD 2GC4B 2AH0D 2AGLD 3L4OC 2IURD 2AGWD 2J57K 2HJBD 2HKRD 2AH1D 2IUVD 2GC7B 2H47B 2HJ4D 2OK4D 2J56L 2I0SD 2Q7QD 2OIZD 2BBKL 2AGYD 2OJYD 1MG3B 2IAAB 2HKMD
chains in the KnotProt database with same CATH homology

  
#chains in the KnotProt database with same CATH superfamily
 2MAD L;  2I0T D;  2AGX D;  1MG2 B;  1MDA M;  3C75 L;  2MTA L;  2H3X B;  2HXC D;  2IUQ D;  2J55 L;  2IUP D;  2GC4 B;  2AH0 D;  2AGL D;  3L4O C;  2IUR D;  2AGW D;  2J57 K;  2HJB D;  2HKR D;  2AH1 D;  2IUV D;  2GC7 B;  2H47 B;  2HJ4 D;  2OK4 D;  2J56 L;  2I0S D;  2Q7Q D;  2OIZ D;  2BBK L;  2AGY D;  2OJY D;  1MG3 B;  2IAA B;  2HKM D; 
#chains in the KnotProt database with same CATH topology
 2MAD L;  2I0T D;  2AGX D;  1MG2 B;  1MDA M;  3C75 L;  2MTA L;  2H3X B;  2HXC D;  2IUQ D;  2J55 L;  2IUP D;  2GC4 B;  2AH0 D;  2AGL D;  3L4O C;  2IUR D;  2AGW D;  2J57 K;  2HJB D;  2HKR D;  2AH1 D;  2IUV D;  2GC7 B;  2H47 B;  2HJ4 D;  2OK4 D;  2J56 L;  2I0S D;  2Q7Q D;  2OIZ D;  2BBK L;  2AGY D;  2OJY D;  1MG3 B;  2IAA B;  2HKM D; 
#chains in the KnotProt database with same CATH homology
 2MAD L;  2I0T D;  2AGX D;  1MG2 B;  1MDA M;  3C75 L;  2MTA L;  2H3X B;  2HXC D;  2IUQ D;  2J55 L;  2IUP D;  2GC4 B;  2AH0 D;  2AGL D;  3L4O C;  2IUR D;  2AGW D;  2J57 K;  2HJB D;  2HKR D;  2AH1 D;  2IUV D;  2GC7 B;  2H47 B;  2HJ4 D;  2OK4 D;  2J56 L;  2I0S D;  2Q7Q D;  2OIZ D;  2BBK L;  2AGY D;  2OJY D;  1MG3 B;  2IAA B;  2HKM D;
1MG2B 1MG3B 2GC4B 2GC7B 2J55L 2J56L 2J57K 1MAEL 1MAFL
similar chains in the KnotProt database (40% sequence similarity)
None
similar chains in the pdb database (40% sequence similarity)

  
#similar chains in the KnotProt database (40% sequence similarity)
1MG2 B; 1MG3 B; 2GC4 B; 2GC7 B; 2J55 L; 2J56 L; 2J57 K; 
#similar chains, but unknotted
1MAF L; 
#similar chains in the pdb database (40% sequence similarity)
How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling
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