Found 38 chains in Knotoided chains table. Displaying 1 - 38. Applied filters: Probabilistic

Search results query: topological notation for knotoids: K 4.1, 3.2m, 3.2

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#pdbid|chain|deposition date|is S/K-not|(slip)knot types;
      
  6ptq|A|2019-10-24|K|4.1 3.2- 3.2;
  6baf|A|2018-09-25|K|4.1 3.2- 3.2;
  6bak|A|2018-09-25|K|4.1 3.2- 3.2;
  6bap|A|2018-09-25|K|4.1 3.2- 3.2;
  6bay|A|2018-09-25|K|4.1 3.2- 3.2;
  5mg0|A|2018-09-12|K|4.1 3.2- 3.2;
  5l8m|A|2018-06-12|K|4.1 3.2- 3.2;
  4e04|A|2018-06-11|K|4.1 3.2- 3.2;
  3nhq|A|2018-06-11|K|4.1 3.2- 3.2;
  4gw9|A|2018-06-11|K|4.1 3.2- 3.2;
  3nop|C|2018-06-11|K|4.1 3.2- 3.2;
  4r6l|A|2018-06-11|K|4.1 3.2- 3.2;
  3not|C|2018-06-11|K|4.1 3.2- 3.2;
  3nou|C|2018-06-11|K|4.1 3.2- 3.2;
  5hsq|A|2018-06-11|K|4.1 3.2- 3.2;
  5i5l|A|2018-06-11|K|4.1 3.2- 3.2;
  1ztu|A|2018-06-11|K|4.1 3.2- 3.2;
  4wkk|A|2018-06-11|K|4.1 3.2- 3.2;
  5lbr|A|2018-06-11|K|4.1 3.2- 3.2;
  4y5f|A|2018-06-11|K|4.1 3.2- 3.2;
  5nm3|A|2018-06-11|K|4.1 3.2- 3.2;
  3s7n|A|2018-06-11|K|4.1 3.2- 3.2;
  5nwn|A|2018-06-11|K|4.1 3.2- 3.2;
  3g6o|A|2018-06-11|K|4.1 3.2- 3.2;
  3ibr|A|2018-06-11|K|4.1 3.2- 3.2;
  4z1w|A|2018-06-11|K|4.1 3.2- 3.2;
  4zrr|A|2018-06-11|K|4.1 3.2- 3.2;
  4o01|B|2018-06-11|K|4.1 3.2- 3.2;
  4o01|C|2018-06-11|K|4.1 3.2- 3.2;
  4o01|D|2018-06-11|K|4.1 3.2- 3.2;
  4o0p|B|2018-06-11|K|4.1 3.2- 3.2;
  3zq5|A|2018-06-11|K|4.1 3.2- 3.2;
  2o9b|A|2018-06-11|K|4.1 3.2- 3.2;
  2o9c|A|2018-06-11|K|4.1 3.2- 3.2;
  2ool|A|2018-06-11|K|4.1 3.2- 3.2;
  6fht|A|2018-06-11|K|4.1 3.2- 3.2;
  4q0h|A|2018-06-11|K|4.1 3.2- 3.2;
  4q0j|A|2018-06-11|K|4.1 3.2- 3.2;
Knotoid types pdb Title
K 4.1, 3.2m, 3.2 6ptqA Dark, room temperature, pcm myxobacterial phytochrome, p2, wild type
K 4.1, 3.2m, 3.2 6bafA Structure of the chromophore binding domain of stigmatella aurantiaca phytochrome p1, wild-type
K 4.1, 3.2m, 3.2 6bakA The structure of the stigmatella aurantiaca phytochrome chromophore binding domain t289h mutant
K 4.1, 3.2m, 3.2 6bapA Stigmatella aurantiaca bacterial phytochrome pas-gaf-phy, t289h mutant
K 4.1, 3.2m, 3.2 6bayA Stigmatella aurantiaca bacterial phytochrome p1, pas-gaf-phy t289h mutant, room temperature structure
K 4.1, 3.2m, 3.2
6
5mg0A Structure of pas-gaf fragment of deinococcus phytochrome by serial femtosecond crystallography
K 4.1, 3.2m, 3.2
7
5l8mA Wild-type pas-gaf fragment from deinococcus radiodurans bphp collected at lcls
K 4.1, 3.2m, 3.2 4e04A Rpbphp2 chromophore-binding domain crystallized by homologue-directed mutagenesis.
K 4.1, 3.2m, 3.2 3nhqA The dark pfr structure of the photosensory core module of p. aeruginosa bacteriophytochrome
K 4.1, 3.2m, 3.2 4gw9A Structure of a bacteriophytochrome and light-stimulated protomer swapping with a gene repressor
K 4.1, 3.2m, 3.2
2
3nopC Light-induced intermediate structure l1 of pseudomonas aeruginosa bacteriophytochrome
K 4.1, 3.2m, 3.2
8
4r6lA Crystal structure of bacteriophytochrome rpbphp2 from photosynthetic bacterium r. palustris
K 4.1, 3.2m, 3.2
1
3notC Light-induced intermediate structure l2 of p. aeruginosa bacteriophytochrome
K 4.1, 3.2m, 3.2
2
3nouC Light-induced intermediate structure l3 of p. aeruginosa bacteriophytochrome
K 4.1, 3.2m, 3.2 5hsqA The surface engineered photosensory module (pas-gaf-phy) of the bacterial phytochrome agp1 (atbphp1) in the pr form, chromophore modelled with an endocyclic double bond in pyrrole ring a.
K 4.1, 3.2m, 3.2
2
5i5lA The photosensory module (pas-gaf-phy) of the bacterial phytochrome agp1 (atbphp1) in the pr form, chromophore modelled with an endocyclic double bond in pyrrole ring a
K 4.1, 3.2m, 3.2
8
1ztuA Structure of the chromophore binding domain of bacterial phytochrome
K 4.1, 3.2m, 3.2 4wkkA The photosensory module (pas-gaf-phy) of the bacterial phytochrome agp1 (atbphp1) in the pr form, chromophore modelled with an exocyclic double bond at pyrrole ring a.
K 4.1, 3.2m, 3.2
6
5lbrA Wild-type pas-gaf fragment from deinococcus radiodurans bphp collected at sacla
K 4.1, 3.2m, 3.2 4y5fA Pas-gaf fragment from deinococcus radiodurans bphp assembled with bv - y307s, high dose
K 4.1, 3.2m, 3.2
7
5nm3A Deinococcus radiodurans bphp pas-gaf-phy y263f mutant, pre-illuminated
K 4.1, 3.2m, 3.2
6
3s7nA Crystal structure of the alternate his 207 conformation of the infrared fluorescent d207h variant of deinococcus bacteriophytochrome chromophore binding domain at 2.45 angstrom resolution
K 4.1, 3.2m, 3.2
9
5nwnA Deinococcus radiodurans bphp pas-gaf-phy y263f mutant, dark
K 4.1, 3.2m, 3.2 3g6oA Crystal structure of p. aeruginosa bacteriophytochrome pabphp photosensory core domain mutant q188l
K 4.1, 3.2m, 3.2 3ibrA Crystal structure of p. aeruginosa bacteriophytochrome photosensory core module mutant q188l in the mixed pr/pfr state
K 4.1, 3.2m, 3.2
6
4z1wA Crystal structure of monomeric bacteriophytochrome mutant d207l y263f from synchrotron
K 4.1, 3.2m, 3.2
5
4zrrA Crystal structure of monomeric bacteriophytochrome mutant d207l y263f at 1.5 a resolution using a home source.
K 4.1, 3.2m, 3.2
10
4o01B Crystal structure of d. radiodurans bacteriophytochrome photosensory core module in its illuminated form
K 4.1, 3.2m, 3.2
8
4o01C Crystal structure of d. radiodurans bacteriophytochrome photosensory core module in its illuminated form
K 4.1, 3.2m, 3.2
8
4o01D Crystal structure of d. radiodurans bacteriophytochrome photosensory core module in its illuminated form
K 4.1, 3.2m, 3.2
8
4o0pB Crystal structure of d. radiodurans bacteriophytochrome photosensory core module in its dark form
K 4.1, 3.2m, 3.2 3zq5A Structure of the y263f mutant of the cyanobacterial phytochrome cph1
K 4.1, 3.2m, 3.2
4
2o9bA Crystal structure of bacteriophytochrome chromophore binding domain
K 4.1, 3.2m, 3.2 2o9cA Crystal structure of bacteriophytochrome chromophore binding domain at 1.45 angstrom resolution
K 4.1, 3.2m, 3.2
8
2oolA Crystal structure of the chromophore-binding domain of an unusual bacteriophytochrome rpbphp3 from r. palustris
K 4.1, 3.2m, 3.2
2
6fhtA Crystal structure of an artificial phytochrome regulated adenylate/guanylate cyclase in its dark adapted pr form
K 4.1, 3.2m, 3.2
9
4q0hA Deinococcus radiodurans bphp pas-gaf
K 4.1, 3.2m, 3.2
7
4q0jA Deinococcus radiodurans bphp photosensory module
How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling