1F48A

Crystal structure of the escherichia coli arsenite-translocating atpase
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 196
Knot K +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 297-563 267 1-296, 564-586 296 23 knot
Chain Sequence
MQFLQNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQVFSQTIGNTIQAIASVPGLSALEIDPQAAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTDASLLTRFDHIIFDTAPTGHTIRLLQLPGAWSSFIDSNPEGASCLGPMAGLEKQREQYAYAVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLPKTEAANDTLAAAIWEREQEALANLPADLAGLPTDTLFLQPVNMVGVSALSRLLSTQP------------RPDIPSLSALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAAHLNNLQVSRIDPHE--------ETERYRQHVLETKGKELDEAGKRLLEEDLRSPCTEEIAVFQAFSRVIREAGKRFVVMDTAPTGHTLLLLDATTPMMLLQDPERTKVLLVTLP------------------ETTPVLEAANLQADLERAGIHPWGWIINNSLSIADTRSPLLRMRAQQELPQIESVKRQHASRVALVPVLASEPTGIDKLKQLAGHHH
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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2.1 9-524 516 1-8 530-548 525-529 8 19 slipknot
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3.1 297-526 230 527-548 1-8 9-296 8 21 slipknot
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2.1 114-522 409 1-11, 527-548 12-113, 523-526 11 22 slipknot
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2.1 120-522 403 1-113, 527-548 114-119, 523-526 113 22 slipknot
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2.1 164-522 359 1-119, 527-548 120-163, 523-526 119 22 slipknot
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2.1 296-522 227 1-170, 527-548 171-295, 523-526 170 22 slipknot
sequence length 586
structure length 548
publication title Structure of the ArsA ATPase: the catalytic subunit of a heavy metal resistance pump.
pubmed doi rcsb
molecule tags Hydrolase
molecule keywords ARSENITE-TRANSLOCATING ATPASE
source organism Escherichia coli
missing residues 297-308, 370-377, 462-479
total genus Genus: 196
ec nomenclature ec 3.6.3.16: Arsenite-transporting ATPase.
pdb deposition date 2000-06-07
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02374 ArsA_ATPase Anion-transporting ATPase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolases 1f48A01
3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolases 1f48A02
4JBXA 1KI3A 1OSNA 3RDPA 4IVQA 1P6XA 1F48A 1II9A 1E2HA 1VTKA 2KI5A 3VTKA 1E2NA 1E2PA 1E2KA 1KI6A 1E2MA 4JBYA 1OF1A 1P73A 1E2LA 1P7CA 1P72A 4IVPA 1KIMA 1KI6B 1GKUB 1P75A 1KI2A 1KI7A 1E2IA 1E2JA 1KI4A 1KI8A 1QHIA 3F0TA 4IVRA 2VTKA
chains in the KnotProt database with same CATH superfamily
4JBXA 1KI3A 1OSNA 1LNSA 3KZNA 3FSGA 1P6XA 4IVQA 3RDPA 1F48A 1YVEI 3L02A 1YRLA 1JS1X 1DBIA 1II9A 3KZMA 1E2HA 1VTKA 2KI5A 3KZKA 3L06A 3M4JA 3VTKA 1E2NA 1E2PA 1E2KA 1KI6A 1E2MA 1YH1A 4JBYA 1OF1A 3M4NA 2XTJA 1P73A 1E2LA 3L04A 3M5DA 1R4NB 3M5CA 1P7CA 1QMGA 1P72A 2FG6C 3KZCA 4IVPA 1KIMA 1KI6B 1GKUB 1P75A 3L05A 3KZOA 1KI2A 1KI7A 1E2IA 1E2JA 1KI4A 2G7MC 1R4MB 1KI8A 1QHIA 3FR7A 3FR8A 3F0TA 4IVRA 2VTKA
chains in the KnotProt database with same CATH topology
4JBXA 1KI3A 1OSNA 3RDPA 4IVQA 1P6XA 1F48A 1II9A 1E2HA 1VTKA 2KI5A 3VTKA 1E2NA 1E2PA 1E2KA 1KI6A 1E2MA 4JBYA 1OF1A 1P73A 1E2LA 1P7CA 1P72A 4IVPA 1KIMA 1KI6B 1GKUB 1P75A 1KI2A 1KI7A 1E2IA 1E2JA 1KI4A 1KI8A 1QHIA 3F0TA 4IVRA 2VTKA
chains in the KnotProt database with same CATH homology

  
#chains in the KnotProt database with same CATH superfamily
 4JBX A;  1KI3 A;  1OSN A;  3RDP A;  4IVQ A;  1P6X A;  1F48 A;  1II9 A;  1E2H A;  1VTK A;  2KI5 A;  3VTK A;  1E2N A;  1E2P A;  1E2K A;  1KI6 A;  1E2M A;  4JBY A;  1OF1 A;  1P73 A;  1E2L A;  1P7C A;  1P72 A;  4IVP A;  1KIM A;  1KI6 B;  1GKU B;  1P75 A;  1KI2 A;  1KI7 A;  1E2I A;  1E2J A;  1KI4 A;  1KI8 A;  1QHI A;  3F0T A;  4IVR A;  2VTK A; 
#chains in the KnotProt database with same CATH topology
 4JBX A;  1KI3 A;  1OSN A;  1LNS A;  3KZN A;  3FSG A;  1P6X A;  4IVQ A;  3RDP A;  1F48 A;  1YVE I;  3L02 A;  1YRL A;  1JS1 X;  1DBI A;  1II9 A;  3KZM A;  1E2H A;  1VTK A;  2KI5 A;  3KZK A;  3L06 A;  3M4J A;  3VTK A;  1E2N A;  1E2P A;  1E2K A;  1KI6 A;  1E2M A;  1YH1 A;  4JBY A;  1OF1 A;  3M4N A;  2XTJ A;  1P73 A;  1E2L A;  3L04 A;  3M5D A;  1R4N B;  3M5C A;  1P7C A;  1QMG A;  1P72 A;  2FG6 C;  3KZC A;  4IVP A;  1KIM A;  1KI6 B;  1GKU B;  1P75 A;  3L05 A;  3KZO A;  1KI2 A;  1KI7 A;  1E2I A;  1E2J A;  1KI4 A;  2G7M C;  1R4M B;  1KI8 A;  1QHI A;  3FR7 A;  3FR8 A;  3F0T A;  4IVR A;  2VTK A; 
#chains in the KnotProt database with same CATH homology
 4JBX A;  1KI3 A;  1OSN A;  3RDP A;  4IVQ A;  1P6X A;  1F48 A;  1II9 A;  1E2H A;  1VTK A;  2KI5 A;  3VTK A;  1E2N A;  1E2P A;  1E2K A;  1KI6 A;  1E2M A;  4JBY A;  1OF1 A;  1P73 A;  1E2L A;  1P7C A;  1P72 A;  4IVP A;  1KIM A;  1KI6 B;  1GKU B;  1P75 A;  1KI2 A;  1KI7 A;  1E2I A;  1E2J A;  1KI4 A;  1KI8 A;  1QHI A;  3F0T A;  4IVR A;  2VTK A;
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling