3L02A

Crystal structure of n-acetyl-l-ornithine transcarbamylase e92a mutant complexed with carbamyl phosphate and n-succinyl-l-norvaline
Genus: 128
Knot K +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 174-251 78 1-173, 252-332 173 81 knot
Chain Sequence
LKHFLNTQDWSRAELDALLTQAALFKRNKLGSELKGKSIALVFFNPSMRTRTSFELGAFQLGGHAVVLQPGKDAWPIEFNLGTVMDGDTAEHIAEVARVLGRYVDLIGVRAFPKFVDWSKDREDQVLKSFAKYSPVPVINMETITHPCQELAHALALQEHFGTPDLRGKKYVLTWTYHPKPLNTAVANSALTIATRMGMDVTLLCPTPDYILDERYMDWAAQNVAESGGSLQVSHDIDSAYAGADVVYAKSWGALPFFGNWEPEKPIRDQYQHFIVDERKMALTNNGVFSHCLPLRRNVKATDAVMDSPNCIAIDEAENRLHVQKAIMAALV
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1 174-251 78 1-173, 252-332 173 81 knot
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2.1 65-248 184 1-7, 252-332 8-64, 249-251 7 81 slipknot
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2.1 170-248 79 1-64, 252-332 65-169, 249-251 64 81 slipknot
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2.1 175-271 97 1-173, 282-332 174-174, 272-281 173 51 slipknot
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3.1 175-298 124 1-173, 309-332 174-174, 299-308 173 24 slipknot
sequence length 332
structure length 332
publication title A single mutation in the active site swaps the substrate specificity of N-acetyl-L-ornithine transcarbamylase and N-succinyl-L-ornithine transcarbamylase.
pubmed doi rcsb
molecule tags Transferase
molecule keywords N-acetylornithine carbamoyltransferase
source organism Xanthomonas campestris pv. campestris
total genus Genus: 128
ec nomenclature ec 2.1.3.9: N-acetylornithine carbamoyltransferase.
pdb deposition date 2009-12-09
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00185 OTCace Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.50.1370 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Rossmann fold 3l02A01
3.40.50.1370 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Rossmann fold 3l02A02
3KZNA 1YH1A 3KZOA 2FG7C 2FG7X 3KZMA 3M5DA 3M4NA 3M5CA 1JS1X 3L02A 3L05A 3M4JA 3L04A 3KZCA 2G7MC 2FG6C 3L06A 3KZKA
chains in the KnotProt database with same CATH superfamily
4IVRA 1OF1A 3KZNA 1QMGA 1YH1A 1KI7A 3KZOA 2FG7C 3FR7A 2KI5A 2FG7X 3KZMA 1YRLA 1E2KA 1E2LA 3F0TA 3M5DA 4JBYA 4IVQA 1E2MA 1KIMA 1KI6B 1II9A 1VTKA 1GKUB 1P72A 3M4NA 4JBXA 1R4NB 1KI3A 3M5CA 1JS1X 1P7CA 3L02A 1KI8A 1LNSA 3L05A 1E2JA 1E2NA 1KI6A 3M4JA 1OSNA 1R4MB 2XTJA 3L04A 1KI4A 1QHIA 1P6XA 1P73A 3FSGA 2VTKA 1KI2A 3KZCA 1E2HA 4IVPA 1YVEI 1E2IA 3VTKA 3FR8A 2G7MC 2FG6C 1DBIA 1E2PA 1P75A 1F48A 3L06A 3KZKA 3RDPA
chains in the KnotProt database with same CATH topology
3KZNA 1YH1A 3KZOA 2FG7C 2FG7X 3KZMA 3M5DA 1GKUB 3M4NA 3M5CA 1JS1X 3L02A 3L05A 1LNSA 3M4JA 2XTJA 3L04A 3FSGA 3KZCA 2G7MC 2FG6C 1DBIA 3L06A 3KZKA
chains in the KnotProt database with same CATH homology

  
#chains in the KnotProt database with same CATH superfamily
 3KZN A;  1YH1 A;  3KZO A;  2FG7 C;  2FG7 X;  3KZM A;  3M5D A;  3M4N A;  3M5C A;  1JS1 X;  3L02 A;  3L05 A;  3M4J A;  3L04 A;  3KZC A;  2G7M C;  2FG6 C;  3L06 A;  3KZK A; 
#chains in the KnotProt database with same CATH topology
 4IVR A;  1OF1 A;  3KZN A;  1QMG A;  1YH1 A;  1KI7 A;  3KZO A;  2FG7 C;  3FR7 A;  2KI5 A;  2FG7 X;  3KZM A;  1YRL A;  1E2K A;  1E2L A;  3F0T A;  3M5D A;  4JBY A;  4IVQ A;  1E2M A;  1KIM A;  1KI6 B;  1II9 A;  1VTK A;  1GKU B;  1P72 A;  3M4N A;  4JBX A;  1R4N B;  1KI3 A;  3M5C A;  1JS1 X;  1P7C A;  3L02 A;  1KI8 A;  1LNS A;  3L05 A;  1E2J A;  1E2N A;  1KI6 A;  3M4J A;  1OSN A;  1R4M B;  2XTJ A;  3L04 A;  1KI4 A;  1QHI A;  1P6X A;  1P73 A;  3FSG A;  2VTK A;  1KI2 A;  3KZC A;  1E2H A;  4IVP A;  1YVE I;  1E2I A;  3VTK A;  3FR8 A;  2G7M C;  2FG6 C;  1DBI A;  1E2P A;  1P75 A;  1F48 A;  3L06 A;  3KZK A;  3RDP A; 
#chains in the KnotProt database with same CATH homology
 3KZN A;  1YH1 A;  3KZO A;  2FG7 C;  2FG7 X;  3KZM A;  3M5D A;  1GKU B;  3M4N A;  3M5C A;  1JS1 X;  3L02 A;  3L05 A;  1LNS A;  3M4J A;  2XTJ A;  3L04 A;  3FSG A;  3KZC A;  2G7M C;  2FG6 C;  1DBI A;  3L06 A;  3KZK A;
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the KnotProt database (?% sequence similarity)
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KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling