2G7MC

Crystal structure of b. fragilis n-succinylornithine transcarbamylase p90e mutant complexed with carbamoyl phosphate and n-acetylnorvaline
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 174-239 66 1-173, 240-320 173 81 knot
Chain Sequence
SHMKKFTCVQDIGDLKSALAESFEIKKDRFKYVELGRNKTLLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKEEHLLEAIPVMGCYCDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYLGDNYGQILSTDRNWTVGDRQMAVTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLENLP
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 173-283 111 1-172, 284-320 172 37 knot
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3.1 173-239 67 1-172 284-320 240-283 172 37 slipknot
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2.1 171-236 66 1-24, 240-320 25-170, 237-239 24 81 slipknot
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2.1 175-287 113 1-172, 300-320 173-174, 288-299 172 21 slipknot
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3.1 175-306 132 1-172, 314-320 173-174, 307-313 172 7 slipknot
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3.1 175-314 140 1-172, 320-320 173-174, 315-319 172 1 slipknot
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3.1 175-319 145 320-320 1-172 173-174 172 0 slipknot
sequence length 320
structure length 320
publication title A single mutation in the active site swaps the substrate specificity of N-acetyl-L-ornithine transcarbamylase and N-succinyl-L-ornithine transcarbamylase.
pubmed doi rcsb
molecule tags Transferase
molecule keywords putative ornithine carbamoyltransferase
source organism Bacteroides fragilis
total genus Genus: 114
ec nomenclature ec 2.1.3.-:
pdb deposition date 2006-02-28
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF00185 OTCace Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.50.1370 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Rossmann fold 2g7mC02
3.40.50.1370 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Rossmann fold 2g7mC01
3KZKA 3L06A 3KZOA 3L02A 3M4NA 3M5CA 3M5DA 2G7MC 3M4JA 3KZCA 1JS1X 1YH1A 3L05A 2FG6C 3L04A 3KZNA 3KZMA
chains in the KnotProt database with same CATH superfamily
3L06A 1OF1A 3L02A 1QHIA 3M4JA 3FSGA 3FR8A 1JS1X 1YH1A 3VTKA 1II9A 1E2LA 3RDPA 3L04A 1P6XA 1E2JA 1E2IA 2XTJA 1KIMA 4IVQA 3M4NA 1GKUB 1QMGA 4IVPA 1KI7A 1KI2A 3L05A 1YVEI 2FG6C 1E2NA 2VTKA 4JBXA 1P75A 1KI6A 1E2KA 3M5CA 3M5DA 3FR7A 1E2PA 1OSNA 1YRLA 3KZCA 1F48A 1P7CA 1R4MB 1R4NB 1DBIA 3F0TA 3KZMA 2KI5A 3KZKA 1E2MA 1KI6B 4IVRA 1P72A 2G7MC 4JBYA 1KI3A 1LNSA 1VTKA 3KZOA 1E2HA 1KI8A 3KZNA 1P73A 1KI4A
chains in the KnotProt database with same CATH topology
3L06A 3L02A 3M4JA 3FSGA 1JS1X 1YH1A 3L04A 2XTJA 3M4NA 1GKUB 3L05A 2FG6C 3M5DA 3M5CA 3KZCA 1DBIA 3KZMA 3KZKA 2G7MC 1LNSA 3KZOA 3KZNA
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 3KZK A;  3L06 A;  3KZO A;  3L02 A;  3M4N A;  3M5C A;  3M5D A;  2G7M C;  3M4J A;  3KZC A;  1JS1 X;  1YH1 A;  3L05 A;  2FG6 C;  3L04 A;  3KZN A;  3KZM A; 
#chains in the KnotProt database with same CATH topology
 3L06 A;  1OF1 A;  3L02 A;  1QHI A;  3M4J A;  3FSG A;  3FR8 A;  1JS1 X;  1YH1 A;  3VTK A;  1II9 A;  1E2L A;  3RDP A;  3L04 A;  1P6X A;  1E2J A;  1E2I A;  2XTJ A;  1KIM A;  4IVQ A;  3M4N A;  1GKU B;  1QMG A;  4IVP A;  1KI7 A;  1KI2 A;  3L05 A;  1YVE I;  2FG6 C;  1E2N A;  2VTK A;  4JBX A;  1P75 A;  1KI6 A;  1E2K A;  3M5C A;  3M5D A;  3FR7 A;  1E2P A;  1OSN A;  1YRL A;  3KZC A;  1F48 A;  1P7C A;  1R4M B;  1R4N B;  1DBI A;  3F0T A;  3KZM A;  2KI5 A;  3KZK A;  1E2M A;  1KI6 B;  4IVR A;  1P72 A;  2G7M C;  4JBY A;  1KI3 A;  1LNS A;  1VTK A;  3KZO A;  1E2H A;  1KI8 A;  3KZN A;  1P73 A;  1KI4 A; 
#chains in the KnotProt database with same CATH homology
 3L06 A;  3L02 A;  3M4J A;  3FSG A;  1JS1 X;  1YH1 A;  3L04 A;  2XTJ A;  3M4N A;  1GKU B;  3L05 A;  2FG6 C;  3M5D A;  3M5C A;  3KZC A;  1DBI A;  3KZM A;  3KZK A;  2G7M C;  1LNS A;  3KZO A;  3KZN A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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