1R4MB

Appbp1-uba3-nedd8, an e1-ubiquitin-like protein complex
Cysteine knot
Loop Piercing
view details
202-c-343-b-346-c-346 199-b-343
Chain Sequence
DWEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMATIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATN----RTLYLQSVTSIEERTRKELGL-------VDGQEAVADVTTPQTVL-FKLHFT
sequence length 430
structure length 418
publication title The structure of the APPBP1-UBA3-NEDD8-ATP complex reveals the basis for selective ubiquitin-like protein activation by an E1.
pubmed doi rcsb
molecule tags Cell cycle
molecule keywords amyloid beta precursor protein-binding protein 1
source organism Homo sapiens
missing residues 374-377, 395-401, 412
ec nomenclature
pdb deposition date 2003-10-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.10.520 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Ubiquitin activating enzymes (Uba3). Chain: B, domain 2 1r4mB02
3.10.20.260 Alpha Beta Roll Ubiquitin-like (UB roll) Ubiquitin activating enzymes (Uba3). Chain: B, domain 3 1r4mB03
3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like Domain 1r4mB01
1R4NB 1YRLA 3FR8A 3FR7A 1QMGA 1YVEI 1R4MB
chains in the KnotProt database with same CATH superfamily
1DBIA 1P7CA 1KI2A 1P6XA 3KZKA 1YRLA 1E2PA 1VTKA 3KZCA 1JS1X 3M5DA 4IVQA 1P75A 3KZOA 4JBXA 3F0TA 4IVPA 3RDPA 1E2NA 1E2KA 1E2IA 1KI4A 1KI7A 1F48A 3L05A 1KI6A 3M4JA 4JBYA 1OF1A 2XTJA 3M5CA 4IVRA 1LNSA 1E2JA 1E2LA 3L04A 1P72A 3KZMA 1II9A 3L06A 3FR7A 1KIMA 1YVEI 1QMGA 1E2HA 1OSNA 2G7MC 3FSGA 1KI8A 3M4NA 1R4NB 3KZNA 1GKUB 1E2MA 1P73A 3FR8A 2KI5A 1KI6B 1QHIA 2FG6C 3L02A 1YH1A 1KI3A 1R4MB 2VTKA 3VTKA
chains in the KnotProt database with same CATH topology
1R4NB 1YRLA 3FR8A 3FR7A 1QMGA 1YVEI 1R4MB
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 1R4N B;  1YRL A;  3FR8 A;  3FR7 A;  1QMG A;  1YVE I;  1R4M B; 
#chains in the KnotProt database with same CATH topology
 1DBI A;  1P7C A;  1KI2 A;  1P6X A;  3KZK A;  1YRL A;  1E2P A;  1VTK A;  3KZC A;  1JS1 X;  3M5D A;  4IVQ A;  1P75 A;  3KZO A;  4JBX A;  3F0T A;  4IVP A;  3RDP A;  1E2N A;  1E2K A;  1E2I A;  1KI4 A;  1KI7 A;  1F48 A;  3L05 A;  1KI6 A;  3M4J A;  4JBY A;  1OF1 A;  2XTJ A;  3M5C A;  4IVR A;  1LNS A;  1E2J A;  1E2L A;  3L04 A;  1P72 A;  3KZM A;  1II9 A;  3L06 A;  3FR7 A;  1KIM A;  1YVE I;  1QMG A;  1E2H A;  1OSN A;  2G7M C;  3FSG A;  1KI8 A;  3M4N A;  1R4N B;  3KZN A;  1GKU B;  1E2M A;  1P73 A;  3FR8 A;  2KI5 A;  1KI6 B;  1QHI A;  2FG6 C;  3L02 A;  1YH1 A;  1KI3 A;  1R4M B;  2VTK A;  3VTK A; 
#chains in the KnotProt database with same CATH homology
 1R4N B;  1YRL A;  3FR8 A;  3FR7 A;  1QMG A;  1YVE I;  1R4M B; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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