3M5CA

Crystal structure of n-acetyl-l-ornithine transcarbamylase k302e mutant complexed with palao
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 174-251 78 1-173, 252-332 173 81 knot
Chain Sequence
LKHFLNTQDWSRAELDALLTQAALFKRNKLGSELKGKSIALVFFNPSMRTRTSFELGAFQLGGHAVVLQPGKDAWPIEFNLGTVMDGDTEEHIAEVARVLGRYVDLIGVRAFPKFVDWSKDREDQVLKSFAKYSPVPVINMETITHPCQELAHALALQEHFGTPDLRGKKYVLTWTYHPKPLNTAVANSALTIATRMGMDVTLLCPTPDYILDERYMDWAAQNVAESGGSLQVSHDIDSAYAGADVVYAKSWGALPFFGNWEPEKPIRDQYQHFIVDERKMALTNNGVFSHCLPLRRNVEATDAVMDSPNCIAIDEAENRLHVQKAIMAALV
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 174-251 78 1-173, 252-332 173 81 knot
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2.1 170-248 79 1-169 255-332 249-254 169 78 slipknot
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2.1 175-274 100 1-173, 281-332 174-174, 275-280 173 52 slipknot
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2.1 175-303 129 1-173, 307-332 174-174, 304-306 173 26 slipknot
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2.1 175-306 132 1-173, 309-332 174-174, 307-308 173 24 slipknot
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2.1 175-322 148 323-332 1-173 174-174 173 9 slipknot
sequence length 332
structure length 332
publication title Reversible post-translational carboxylation modulates the enzymatic activity of N-acetyl-L-ornithine transcarbamylase.
pubmed doi rcsb
molecule tags Transferase
molecule keywords N-acetylornithine carbamoyltransferase
source organism Xanthomonas campestris pv. campestris
total genus Genus: 130
ec nomenclature ec 2.1.3.9: N-acetylornithine carbamoyltransferase.
pdb deposition date 2010-03-12
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00185 OTCace Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.50.1370 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Rossmann fold 3m5cA01
3.40.50.1370 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Rossmann fold 3m5cA02
3M4JA 3L02A 3L06A 3M5CA 3KZMA 3KZNA 3M4NA 3KZKA 3KZCA 1YH1A 2G7MC 3M5DA 3L05A 3L04A 2FG6C 1JS1X 3KZOA
chains in the KnotProt database with same CATH superfamily
4JBYA 1KI7A 1P72A 3FSGA 1P75A 1KIMA 1LNSA 1KI8A 3L04A 3L06A 1KI6B 1P73A 1KI2A 3KZOA 4IVPA 3M5CA 3KZMA 1E2MA 1OSNA 1R4NB 1QMGA 1P6XA 1KI6A 2XTJA 2FG6C 1E2JA 1JS1X 2VTKA 1OF1A 1E2KA 3RDPA 1KI3A 1P7CA 1VTKA 1KI4A 3KZNA 1QHIA 3FR7A 3KZCA 3FR8A 2G7MC 3M5DA 2KI5A 1GKUB 1E2LA 1E2PA 1YRLA 3M4JA 1E2HA 3L02A 3VTKA 1II9A 3M4NA 1YVEI 3KZKA 3F0TA 1DBIA 4JBXA 1R4MB 1YH1A 4IVQA 1F48A 3L05A 1E2IA 1E2NA 4IVRA
chains in the KnotProt database with same CATH topology
3FSGA 1LNSA 3L04A 3L06A 3KZOA 3M5CA 3KZMA 2FG6C 1JS1X 3KZNA 3KZCA 2G7MC 3M5DA 1GKUB 3M4JA 3L02A 3M4NA 3KZKA 1DBIA 1YH1A 2XTJA 3L05A
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 3M4J A;  3L02 A;  3L06 A;  3M5C A;  3KZM A;  3KZN A;  3M4N A;  3KZK A;  3KZC A;  1YH1 A;  2G7M C;  3M5D A;  3L05 A;  3L04 A;  2FG6 C;  1JS1 X;  3KZO A; 
#chains in the KnotProt database with same CATH topology
 4JBY A;  1KI7 A;  1P72 A;  3FSG A;  1P75 A;  1KIM A;  1LNS A;  1KI8 A;  3L04 A;  3L06 A;  1KI6 B;  1P73 A;  1KI2 A;  3KZO A;  4IVP A;  3M5C A;  3KZM A;  1E2M A;  1OSN A;  1R4N B;  1QMG A;  1P6X A;  1KI6 A;  2XTJ A;  2FG6 C;  1E2J A;  1JS1 X;  2VTK A;  1OF1 A;  1E2K A;  3RDP A;  1KI3 A;  1P7C A;  1VTK A;  1KI4 A;  3KZN A;  1QHI A;  3FR7 A;  3KZC A;  3FR8 A;  2G7M C;  3M5D A;  2KI5 A;  1GKU B;  1E2L A;  1E2P A;  1YRL A;  3M4J A;  1E2H A;  3L02 A;  3VTK A;  1II9 A;  3M4N A;  1YVE I;  3KZK A;  3F0T A;  1DBI A;  4JBX A;  1R4M B;  1YH1 A;  4IVQ A;  1F48 A;  3L05 A;  1E2I A;  1E2N A;  4IVR A; 
#chains in the KnotProt database with same CATH homology
 3FSG A;  1LNS A;  3L04 A;  3L06 A;  3KZO A;  3M5C A;  3KZM A;  2FG6 C;  1JS1 X;  3KZN A;  3KZC A;  2G7M C;  3M5D A;  1GKU B;  3M4J A;  3L02 A;  3M4N A;  3KZK A;  1DBI A;  1YH1 A;  2XTJ A;  3L05 A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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