| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 6-123 | 118 | 1-5 | 311-331 | 124-310 | 5 | 21 | slipknot |
Chain Sequence |
VKMGVLRIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGEPLSYWRNLAGEDAICGIYGTQTRRLNGDVSPEDAQRLTAHFQSLFCSPHAIMHAKISALMDTSTSDLVQVNKEPYKIMLSDRHPIASTICFPLSRYLVGDMSPAALPGLLFTLPAEPPGTNLVVCTVSLPSHLSRVS------ETVNLPFVMVLRNVYIMLINTIIFLKTNNWHAGWNTLSFCNDVFKQKLQKSECIKLREVPGIEDTLFAVLKLPELCGEFGNILPLWAWGMETLSNCLRSMSPFVLSLEQTPQHAAQELKTLLPQMTPANMSSGAWNILKELVNAVQD
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
2.1 | 8-123 | 116 | 1-7 | 141-325 | 124-140 | 7 | 185 | slipknot | ||
| view details |
|
2.1 | 9-162 | 154 | 1-8 | 270-325 | 163-269 | 8 | 56 | slipknot | ||
| view details |
|
|
2.1 | 9-269 | 261 | 1-8 | 296-325 | 270-295 | 8 | 30 | slipknot | |
| view details |
|
|
2.1 | 8-295 | 288 | 1-7 | 306-325 | 296-305 | 7 | 20 | slipknot | |
| view details |
|
 |
3.1 | 3-305 | 303 | 1-2 | 308-325 | 306-307 | 2 | 18 | slipknot |
| sequence length |
331
|
| structure length |
325
|
| publication title |
Crystal structure of varicella zoster virus thymidine kinase
pubmed doi rcsb |
| molecule tags |
Transferase
|
| molecule keywords |
Thymidine kinase
|
| source organism |
Human herpesvirus 3
|
| missing residues |
179-184
|
| total genus |
 Genus: 104
|
| ec nomenclature |
ec
2.7.1.21: Thymidine kinase. |
| pdb deposition date | 2003-03-20 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00693 | Herpes_TK | Thymidine kinase from herpesvirus |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases |
#chains in the KnotProt database with same CATH superfamily 4JBY A; 2KI5 A; 1E2L A; 1P72 A; 1OF1 A; 1E2J A; 1F48 A; 1VTK A; 1KI6 B; 3VTK A; 1P7C A; 1KI7 A; 3RDP A; 4IVR A; 2VTK A; 1E2M A; 1II9 A; 1KI4 A; 1OSN A; 4IVQ A; 4JBX A; 1E2N A; 1KI6 A; 1KI8 A; 1P75 A; 3F0T A; 1KIM A; 1GKU B; 1E2P A; 1QHI A; 1P6X A; 1E2H A; 1E2K A; 1KI3 A; 4IVP A; 1KI2 A; 1P73 A; 1E2I A; #chains in the KnotProt database with same CATH topology 3L02 A; 4JBY A; 2KI5 A; 1E2L A; 1P72 A; 3L05 A; 1OF1 A; 1E2J A; 1F48 A; 3FR7 A; 1YVE I; 3M4N A; 1VTK A; 1KI6 B; 3FR8 A; 3M5C A; 3VTK A; 1P7C A; 3L04 A; 3KZO A; 1KI7 A; 3FSG A; 3M4J A; 3RDP A; 4IVR A; 2VTK A; 2G7M C; 1E2M A; 3M5D A; 1LNS A; 1II9 A; 1KI4 A; 2XTJ A; 1OSN A; 4IVQ A; 1DBI A; 4JBX A; 1E2N A; 1KI6 A; 1KI8 A; 1P75 A; 3F0T A; 3KZN A; 3L06 A; 1KIM A; 3KZK A; 3KZM A; 1E2P A; 1YH1 A; 1QHI A; 1P6X A; 1E2H A; 1GKU B; 1JS1 X; 1E2K A; 1YRL A; 1KI3 A; 4IVP A; 1R4N B; 1KI2 A; 1P73 A; 1QMG A; 2FG6 C; 3KZC A; 1R4M B; 1E2I A; #chains in the KnotProt database with same CATH homology 4JBY A; 2KI5 A; 1E2L A; 1P72 A; 1OF1 A; 1E2J A; 1F48 A; 1VTK A; 1KI6 B; 3VTK A; 1P7C A; 1KI7 A; 3RDP A; 4IVR A; 2VTK A; 1E2M A; 1II9 A; 1KI4 A; 1OSN A; 4IVQ A; 4JBX A; 1E2N A; 1KI6 A; 1KI8 A; 1P75 A; 3F0T A; 1KIM A; 1GKU B; 1E2P A; 1QHI A; 1P6X A; 1E2H A; 1E2K A; 1KI3 A; 4IVP A; 1KI2 A; 1P73 A; 1E2I A;
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
