3KZCA

Crystal structure of n-acetyl-l-ornithine transcarbamylase
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 174-251 78 1-173, 252-332 173 81 knot
Chain Sequence
LKHFLNTQDWSRAELDALLTQAALFKRNKLGSELKGKSIALVFFNPSMRTRTSFELGAFQLGGHAVVLQPG----PIEFNLGTVMDGDTEEHIAEVARVLGRYVDLIGVRAFPKFVDWSKDREDQVLKSFAKYSPVPVINMETITHPCQELAHALALQEHFGTPDLRGKKYVLTWTYHPKPLNTAVANSALTIATRMGMDVTLLCPTPDYILDERYMDWAAQNVAESGGSLQVSHDIDSAYAGADVVYAKSWGALPFFGNWEPEKPIRDQYQHFIVDERKMALTNNGVFSHCLPLRRNVKATDAVMDSPNCIAIDEAENRLHVQKAIMAALV
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1 170-247 78 1-169, 248-328 169 81 knot
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2.1 166-244 79 1-165 250-328 245-249 165 79 slipknot
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2.1 171-285 115 1-169, 293-328 170-170, 286-292 169 36 slipknot
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2.1 171-292 122 1-169, 297-328 170-170, 293-296 169 32 slipknot
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3.1 171-301 131 1-169, 306-328 170-170, 302-305 169 23 slipknot
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2.1 171-305 135 1-169, 308-328 170-170, 306-307 169 21 slipknot
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2.1 171-308 138 1-169, 313-328 170-170, 309-312 169 16 slipknot
sequence length 332
structure length 328
publication title Crystal structure of N-acetylornithine transcarbamylase from Xanthomonas campestris: a novel enzyme in a new arginine biosynthetic pathway found in several eubacteria.
pubmed doi rcsb
molecule tags Transferase
molecule keywords N-acetylornithine carbamoyltransferase
source organism Xanthomonas campestris pv. campestris
missing residues 72-75
total genus Genus: 118
ec nomenclature ec 2.1.3.9: N-acetylornithine carbamoyltransferase.
pdb deposition date 2009-12-08
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00185 OTCace Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.50.1370 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Rossmann fold 3kzcA01
3.40.50.1370 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Rossmann fold 3kzcA02
3KZKA 3L06A 3KZOA 3L02A 3M4NA 3M5CA 3M5DA 2G7MC 3M4JA 3KZCA 1JS1X 1YH1A 3L05A 2FG6C 3L04A 3KZNA 3KZMA
chains in the KnotProt database with same CATH superfamily
3L06A 1OF1A 3L02A 1QHIA 3M4JA 3FSGA 3FR8A 1JS1X 1YH1A 3VTKA 1II9A 1E2LA 3RDPA 3L04A 1P6XA 1E2JA 1E2IA 2XTJA 1KIMA 4IVQA 3M4NA 1GKUB 1QMGA 4IVPA 1KI7A 1KI2A 3L05A 1YVEI 2FG6C 1E2NA 2VTKA 4JBXA 1P75A 1KI6A 1E2KA 3M5CA 3M5DA 3FR7A 1E2PA 1OSNA 1YRLA 3KZCA 1F48A 1P7CA 1R4MB 1R4NB 1DBIA 3F0TA 3KZMA 2KI5A 3KZKA 1E2MA 1KI6B 4IVRA 1P72A 2G7MC 4JBYA 1KI3A 1LNSA 1VTKA 3KZOA 1E2HA 1KI8A 3KZNA 1P73A 1KI4A
chains in the KnotProt database with same CATH topology
3L06A 3L02A 3M4JA 3FSGA 1JS1X 1YH1A 3L04A 2XTJA 3M4NA 1GKUB 3L05A 2FG6C 3M5DA 3M5CA 3KZCA 1DBIA 3KZMA 3KZKA 2G7MC 1LNSA 3KZOA 3KZNA
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 3KZK A;  3L06 A;  3KZO A;  3L02 A;  3M4N A;  3M5C A;  3M5D A;  2G7M C;  3M4J A;  3KZC A;  1JS1 X;  1YH1 A;  3L05 A;  2FG6 C;  3L04 A;  3KZN A;  3KZM A; 
#chains in the KnotProt database with same CATH topology
 3L06 A;  1OF1 A;  3L02 A;  1QHI A;  3M4J A;  3FSG A;  3FR8 A;  1JS1 X;  1YH1 A;  3VTK A;  1II9 A;  1E2L A;  3RDP A;  3L04 A;  1P6X A;  1E2J A;  1E2I A;  2XTJ A;  1KIM A;  4IVQ A;  3M4N A;  1GKU B;  1QMG A;  4IVP A;  1KI7 A;  1KI2 A;  3L05 A;  1YVE I;  2FG6 C;  1E2N A;  2VTK A;  4JBX A;  1P75 A;  1KI6 A;  1E2K A;  3M5C A;  3M5D A;  3FR7 A;  1E2P A;  1OSN A;  1YRL A;  3KZC A;  1F48 A;  1P7C A;  1R4M B;  1R4N B;  1DBI A;  3F0T A;  3KZM A;  2KI5 A;  3KZK A;  1E2M A;  1KI6 B;  4IVR A;  1P72 A;  2G7M C;  4JBY A;  1KI3 A;  1LNS A;  1VTK A;  3KZO A;  1E2H A;  1KI8 A;  3KZN A;  1P73 A;  1KI4 A; 
#chains in the KnotProt database with same CATH homology
 3L06 A;  3L02 A;  3M4J A;  3FSG A;  1JS1 X;  1YH1 A;  3L04 A;  2XTJ A;  3M4N A;  1GKU B;  3L05 A;  2FG6 C;  3M5D A;  3M5C A;  3KZC A;  1DBI A;  3KZM A;  3KZK A;  2G7M C;  1LNS A;  3KZO A;  3KZN A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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