| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 7-118 | 112 | 1-6 | 310-333 | 119-309 | 6 | 24 | slipknot |
Chain Sequence |
SHMVTIVRIYLDGVYGIGKSTTGRVMASAASGGSPTLYFPEPMAYWRTLFETDVISGIYDTQNRKQQGNLAVDDAALITAHYQSRFTTPYLILHDHTCTLFGGNSLQRGTQPDLTLVFDRHPVASTVCFPAARYLLGDMSMCALMAMVATLPREPQGGNIVVTTLNVEEHIRRLRTRARIGEQIDITLIATLRNVYFMLVNTCHFLRSGRVWRDGWGELPTSCGAYKHRATQMDAFQERVSPELGDTLFALFKTQELLDDRGVILEVHAWALDALMLKLRNLNVFSADLSGTPRQCAAVVESLLPLMSSTLSDFDSASALERAARTFNAEMGV
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
3.1 | 7-133 | 127 | 1-6 | 281-333 | 134-280 | 6 | 53 | slipknot | ||
| view details |
|
3.1 | 6-282 | 277 | 1-5 | 309-333 | 283-308 | 5 | 25 | slipknot | ||
| view details |
|
3.1 | 9-187 | 179 | 1-2, 286-333 | 3-8, 188-285 | 2 | 48 | slipknot | |||
| view details |
|
3.1 | 10-119 | 110 | 1-3, 175-333 | 4-9, 120-174 | 3 | 159 | slipknot | |||
| view details |
|
3.1 | 9-174 | 166 | 1-6, 188-333 | 7-8, 175-187 | 6 | 146 | slipknot | |||
| view details |
 |
2.1 | 10-190 | 181 | 1-8, 286-333 | 9-9, 191-285 | 8 | 48 | slipknot | |||
| view details |
|
2.1 | 10-174 | 165 | 1-8, 179-333 | 9-9, 175-178 | 8 | 155 | slipknot | |||
| view details |
|
2.1 | 10-285 | 276 | 1-5, 301-333 | 6-9, 286-300 | 5 | 33 | slipknot | |||
| view details |
|
2.1 | 10-300 | 291 | 1-5, 308-333 | 6-9, 301-307 | 5 | 26 | slipknot |
| sequence length |
333
|
| structure length |
333
|
| publication title |
Structural basis for the dual thymidine and thymidylate kinase activity of herpes thymidine kinases.
pubmed doi rcsb |
| molecule tags |
Transferase
|
| molecule keywords |
Thymidine kinase
|
| source organism |
Equid herpesvirus 4
|
| total genus |
 Genus: 127
|
| ec nomenclature |
ec
2.7.1.21: Thymidine kinase. |
| pdb deposition date | 2003-04-30 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00693 | Herpes_TK | Thymidine kinase from herpesvirus |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases |
#chains in the KnotProt database with same CATH superfamily 3RDP A; 1P7C A; 4IVQ A; 1E2K A; 4JBY A; 1E2J A; 1KI6 A; 1QHI A; 1VTK A; 1KI4 A; 1P6X A; 1F48 A; 1KIM A; 1E2N A; 1KI6 B; 2KI5 A; 1OSN A; 1OF1 A; 1E2M A; 1II9 A; 1P75 A; 1KI2 A; 1E2L A; 1KI7 A; 4JBX A; 1KI8 A; 3VTK A; 4IVR A; 3F0T A; 1E2P A; 4IVP A; 1E2H A; 1KI3 A; 1GKU B; 1P73 A; 1P72 A; 1E2I A; 2VTK A; #chains in the KnotProt database with same CATH topology 3M4J A; 1YRL A; 3L05 A; 3KZN A; 3RDP A; 2G7M C; 1P7C A; 3FR8 A; 4IVQ A; 1E2K A; 4JBY A; 1E2J A; 1KI6 A; 1QHI A; 1VTK A; 1KI4 A; 1P6X A; 3M5C A; 3KZM A; 1F48 A; 2FG6 C; 3M4N A; 3KZC A; 1KIM A; 1E2N A; 1KI6 B; 1DBI A; 1R4N B; 2KI5 A; 3L02 A; 1OSN A; 1LNS A; 1OF1 A; 1YVE I; 3L06 A; 1E2M A; 1YH1 A; 1JS1 X; 3FSG A; 1II9 A; 1P75 A; 1KI2 A; 1R4M B; 1E2L A; 1KI7 A; 4JBX A; 3FR7 A; 1KI8 A; 3VTK A; 4IVR A; 3F0T A; 3KZK A; 3KZO A; 1E2P A; 3M5D A; 1E2H A; 1KI3 A; 4IVP A; 2XTJ A; 1GKU B; 1QMG A; 1P73 A; 1P72 A; 1E2I A; 2VTK A; 3L04 A; #chains in the KnotProt database with same CATH homology 3RDP A; 1P7C A; 4IVQ A; 1E2K A; 4JBY A; 1E2J A; 1KI6 A; 1QHI A; 1VTK A; 1KI4 A; 1P6X A; 1F48 A; 1KIM A; 1E2N A; 1KI6 B; 2KI5 A; 1OSN A; 1OF1 A; 1E2M A; 1II9 A; 1P75 A; 1KI2 A; 1E2L A; 1KI7 A; 4JBX A; 1KI8 A; 3VTK A; 4IVR A; 3F0T A; 1E2P A; 4IVP A; 1E2H A; 1KI3 A; 1GKU B; 1P73 A; 1P72 A; 1E2I A; 2VTK A;
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
