| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
41 | 222-420 | 199 | 1-221, 421-487 | 221 | 67 | knot | ||||
| view details |
 |
+31 | 251-363 | 113 | 1-231, 418-487 | 232-250, 364-417 | 231 | 70 | slipknot |
Chain Sequence |
NYFNTLNLRQQLAQLGKCRFMGRDEFADGASYLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPDKQHSDVVRTVQPLMKDGAALGYSHGFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVEEGTDPAYAEKLIQFGWETITEALKQGGITLMMDRLSNPAKLRAYALSEQLKEIMAPLFQKHMDDIISGEFSSGMMADWANDDKKLLTWREETGKTAFETAPQYEGKIGEQEYFDKGVLMIAMVKAGVELAFETMVDSGIIEESAYYESLHELPLIANTIARKRLYEMNVVISDTAEYGNYLFSYACVPLLKPFMAELQPGDLGKAIPEGAVDNGQLRDVNEAIRSHAIEQVGKKLRGYMTDMKRIAV
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
4.1 | 216-426 | 211 | 1-215, 427-487 | 215 | 61 | knot | ||||
| view details |
 |
3.2 | 211-414 | 204 | 1-210 | 430-487 | 415-429 | 210 | 58 | slipknot | ||
| view details |
|
4.1 | 163-429 | 267 | 1-162 | 440-487 | 430-439 | 162 | 48 | slipknot | ||
| view details |
|
4.1 | 217-426 | 210 | 427-487 | 1-215 | 216-216 | 215 | 60 | slipknot | ||
| view details |
|
3.2 | 227-444 | 218 | 1-216, 472-487 | 217-226, 445-471 | 216 | 16 | slipknot | |||
| view details |
|
3.2 | 227-471 | 245 | 1-216, 474-487 | 217-226, 472-473 | 216 | 14 | slipknot | |||
| view details |
 |
2.1 | 237-367 | 131 | 1-220, 390-487 | 221-236, 368-389 | 220 | 98 | slipknot | |||
| view details |
 |
2.3 | 238-413 | 176 | 1-225, 427-487 | 226-237, 414-426 | 225 | 61 | slipknot | |||
| view details |
 |
1.1 | 253-397 | 145 | 1-233, 413-487 | 234-252, 398-412 | 233 | 75 | slipknot | |||
| view details |
 |
3.1 | 247-370 | 124 | 1-235, 396-487 | 236-246, 371-395 | 235 | 92 | slipknot | |||
| view details |
|
2.1 | 248-413 | 166 | 1-237, 427-487 | 238-247, 414-426 | 237 | 61 | slipknot | |||
| view details |
|
2.1 | 257-366 | 110 | 1-246, 387-487 | 247-256, 367-386 | 246 | 101 | slipknot | |||
| view details |
|
1.1 | 257-414 | 158 | 1-247, 429-487 | 248-256, 415-428 | 247 | 59 | slipknot |
| sequence length |
487
|
| structure length |
487
|
| publication title |
The crystal structure of a bacterial class II ketol-acid reductoisomerase: domain conservation and evolution
pubmed doi rcsb |
| molecule tags |
Oxidoreductase
|
| molecule keywords |
Ketol-acid reductoisomerase
|
| source organism |
Escherichia coli
|
| total genus |
 Genus: 195
|
| ec nomenclature |
ec
1.1.1.86: Ketol-acid reductoisomerase. |
| pdb deposition date | 2005-02-04 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01450 | IlvC | Acetohydroxy acid isomeroreductase, catalytic domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | NAD(P)-binding Rossmann-like Domain |
#chains in the KnotProt database with same CATH superfamily 1YVE I; 3FR8 A; 1R4N B; 3FR7 A; 1QMG A; 1R4M B; 1YRL A; 3ULK A; #chains in the KnotProt database with same CATH topology 1P73 A; 2G7M C; 1R4N B; 3KZO A; 1E2N A; 1F48 A; 1OF1 A; 3M5C A; 3RDP A; 3ULK A; 1DBI A; 1E2I A; 1KI6 A; 3M4N A; 1GKU B; 1KI8 A; 1P72 A; 1KI6 B; 1JS1 X; 1E2P A; 1E2J A; 3F0T A; 1YRL A; 2XTJ A; 2FG6 C; 3KZN A; 1YVE I; 1KI2 A; 3VTK A; 1E2M A; 2KI5 A; 3KZC A; 4JBY A; 1KIM A; 4IVP A; 3FSG A; 2VTK A; 3M5D A; 3KZM A; 1KI7 A; 1VTK A; 1R4M B; 3FR8 A; 1KI4 A; 1E2K A; 1OSN A; 1P6X A; 3KZK A; 3L06 A; 1II9 A; 1LNS A; 1E2H A; 1YH1 A; 3M4J A; 3L04 A; 1E2L A; 3L02 A; 3L05 A; 4IVR A; 3FR7 A; 1QMG A; 1KI3 A; 1P75 A; 4IVQ A; 4JBX A; 1QHI A; 1P7C A; #chains in the KnotProt database with same CATH homology 1YVE I; 3FR8 A; 1R4N B; 3FR7 A; 1QMG A; 1R4M B; 1YRL A; 3ULK A;
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
