1LNSA

Crystal structure analysis of the x-prolyl dipeptidyl aminopeptidase from lactococcus lactis
Genus: 252
Slipknot S +31 +31 +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 192-310 119 311-763 1-169 170-191 169 452 slipknot
Chain Sequence
MRFNHFSIVDKNFDEQLAELDQLGFRWSVFWDEKKILKDFLIQSPSDMTALQATAELDVIEFLKSSIELDWEIFWNIALQLLDFVPNFDFEIGKAFEYAKNSNLPQIEAEMTTENIISAFYYLLCTRRKTGMILVEHWVSEGLLPLDNHYHFFNDKSLATFDSSLLEREVLWVESPVDSEQRGENDLIKIQIIRPKSTEKLPVVMTASPYHLGINDKANDLALHDMNVELEEKTSHEIHVEQKLPQKLSAKAKELPIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRSSDGFQTSGDYQQIYSMTAVIDWLNGRARAYTSRKKTHEIKASWANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRSPGGFPGEDLDVLAALTYSRNLDGADFLKGNAEYEKRLAEMTAALDRKSGDYNQFWHDRNYLINTDKVKADVLIVHGLQDWNVTPEQAYNFWKALPEGHAKHAFLHRGAHIYMNSWQSIDFSETINAYFVAKLLDRDLNLNLPPVILQENSKDQVWTMMNDFGANTQIKLPLGKTAVSFAQFDNNYDDETFKKYSKDFNVFKKDLFENKANEAVIDLELPSMLTINGPVELELRLKLNDTKGFLSAQILDFGQKKRLEDKVRVKDFKVLDRGRNFMLDDLVELPLVESPYQLVTKGFTNLQNQSLLTVSDLKADEWFTIKFELQPTIYHLEKADKLRVILYSTDFEHTVRDNRKVTYEIDLSQSKLIIPIESVKN
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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2.1 193-451 259 1-167, 736-763 168-192, 452-735 167 28 slipknot
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1.1 191-295 105 1-168, 317-763 169-190, 296-316 168 447 slipknot
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2.1 180-385 206 1-168, 397-763 169-179, 386-396 168 367 slipknot
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1.1 182-395 214 1-168, 407-763 169-181, 396-406 168 357 slipknot
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2.1 187-333 147 1-169, 349-763 170-186, 334-348 169 415 slipknot
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1.1 183-395 213 1-181, 407-763 182-182, 396-406 181 357 slipknot
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1.1 191-429 239 1-169, 450-763 170-190, 430-449 169 314 slipknot
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2.1 181-379 199 1-171, 391-763 172-180, 380-390 171 373 slipknot
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2.1 193-358 166 1-179, 376-763 180-192, 359-375 179 388 slipknot
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1.1 190-316 127 1-180, 327-763 181-189, 317-326 180 437 slipknot
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1.1 192-395 204 1-182, 406-763 183-191, 396-405 182 358 slipknot
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2.1 193-379 187 1-183, 395-763 184-192, 380-394 183 369 slipknot
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2.1 193-394 202 1-183, 396-763 184-192, 395-395 183 368 slipknot
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2.1 194-386 193 1-192, 397-763 193-193, 387-396 192 367 slipknot
sequence length 763
structure length 763
publication title The Structural Basis for Catalysis and Specificity of the X-prolyl dipepdidyl aminopeptidase from Lactococcus lactis
pubmed doi rcsb
molecule tags Hydrolase
molecule keywords X-PROLYL DIPEPTIDYL AMINOPEPTIDASE
source organism Lactococcus lactis
total genus Genus: 252
ec nomenclature ec 3.4.14.11: Xaa-Pro dipeptidyl-peptidase.
pdb deposition date 2002-05-03
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02129 Peptidase_S15 X-Pro dipeptidyl-peptidase (S15 family)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.120.260 Mainly Beta Sandwich Jelly Rolls Galactose-binding domain-like 1lnsA04
3.40.50.1820 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Rossmann fold 1lnsA02
1LNSA 3FSGA
chains in the KnotProt database with same CATH superfamily
1JS1X 1P72A 2FG6C 3KZCA 1KI2A 1LNSA 3L06A 4IVPA 4JBXA 1P6XA 1KIMA 3L04A 1QHIA 4IVQA 1II9A 3M4NA 3VTKA 1KI4A 3KZMA 1R4NB 1OF1A 1E2MA 1P7CA 1P75A 3KZKA 3L02A 1E2KA 1E2IA 3FSGA 3M4JA 3FR8A 1F48A 1KI8A 1KI7A 2XTJA 1KI6B 1QMGA 4IVRA 1E2LA 1E2PA 1DBIA 3M5CA 1KI6A 1KI3A 1E2NA 1GKUB 3KZNA 3RDPA 3L05A 1YRLA 2KI5A 1R4MB 1OSNA 3F0TA 1E2HA 1E2JA 1VTKA 2G7MC 3KZOA 1YH1A 3M5DA 3FR7A 1P73A 2VTKA 4JBYA 1YVEI
chains in the KnotProt database with same CATH topology
1JS1X 2FG6C 3KZCA 1LNSA 3L06A 3L04A 3M4NA 3KZMA 3L02A 3KZKA 3M4JA 3FSGA 2XTJA 1DBIA 3M5CA 1GKUB 3KZNA 3L05A 2G7MC 3KZOA 1YH1A 3M5DA
chains in the KnotProt database with same CATH homology

  
#chains in the KnotProt database with same CATH superfamily
 1LNS A;  3FSG A; 
#chains in the KnotProt database with same CATH topology
 1JS1 X;  1P72 A;  2FG6 C;  3KZC A;  1KI2 A;  1LNS A;  3L06 A;  4IVP A;  4JBX A;  1P6X A;  1KIM A;  3L04 A;  1QHI A;  4IVQ A;  1II9 A;  3M4N A;  3VTK A;  1KI4 A;  3KZM A;  1R4N B;  1OF1 A;  1E2M A;  1P7C A;  1P75 A;  3KZK A;  3L02 A;  1E2K A;  1E2I A;  3FSG A;  3M4J A;  3FR8 A;  1F48 A;  1KI8 A;  1KI7 A;  2XTJ A;  1KI6 B;  1QMG A;  4IVR A;  1E2L A;  1E2P A;  1DBI A;  3M5C A;  1KI6 A;  1KI3 A;  1E2N A;  1GKU B;  3KZN A;  3RDP A;  3L05 A;  1YRL A;  2KI5 A;  1R4M B;  1OSN A;  3F0T A;  1E2H A;  1E2J A;  1VTK A;  2G7M C;  3KZO A;  1YH1 A;  3M5D A;  3FR7 A;  1P73 A;  2VTK A;  4JBY A;  1YVE I; 
#chains in the KnotProt database with same CATH homology
 1JS1 X;  2FG6 C;  3KZC A;  1LNS A;  3L06 A;  3L04 A;  3M4N A;  3KZM A;  3L02 A;  3KZK A;  3M4J A;  3FSG A;  2XTJ A;  1DBI A;  3M5C A;  1GKU B;  3KZN A;  3L05 A;  2G7M C;  3KZO A;  1YH1 A;  3M5D A;
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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How to cite
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