1YH1A

Crystal structure of acetylornithine transcarbamylase
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 174-251 78 1-173, 252-334 173 83 knot
Chain Sequence
LKHFLNTQDWSRAELDALLTQAALFKRNKLGSELKGKSIALVFFNPSMRTRTSFELGAFQLGGHAVVLQPGKDAWPIEFNLGTVMDGDTEEHIAEVARVLGRYVDLIGVRAFPKFVDWSKDREDQVLKSFAKYSPVPVINMETITHPCQELAHALALQEHFGTPDLRGKKYVLTWTYHPKPLNTAVANSALTIATRMGMDVTLLCPTPDYILDERYMDWAAQNVAESGGSLQVSHDIDSAYAGADVVYAKSWGALPFFGNWEPEKPIRDQYQHFIVDERKMALTNNGVFSHCLPLRRNVKATDAVMDSPNCIAIDEAENRLHVQKAIMAALVGQ
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 174-251 78 1-173, 252-334 173 83 knot
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2.1 133-248 116 1-4, 252-334 5-132, 249-251 4 83 slipknot
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2.1 155-249 95 1-133, 252-334 134-154, 250-251 133 83 slipknot
view details
3.1 175-284 110 1-173, 291-334 174-174, 285-290 173 44 slipknot
view details
2.1 175-322 148 323-334 1-173 174-174 173 11 slipknot
sequence length 334
structure length 334
publication title Crystal structure of N-acetylornithine transcarbamylase from Xanthomonas campestris: a novel enzyme in a new arginine biosynthetic pathway found in several eubacteria.
pubmed doi rcsb
molecule tags Hydrolase
molecule keywords N-acetyl-L-ornithine carbamoyltransferase
source organism Xanthomonas campestris
ec nomenclature
pdb deposition date 2005-01-06
KnotProt deposition date 2014-07-31
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.50.1370 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Rossmann fold 1yh1A01
3.40.50.1370 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Rossmann fold 1yh1A02
3L06A 3KZNA 3L05A 1YH1A 3KZCA 1JS1X 3M4NA 3L02A 3M5CA 3M4JA 3KZOA 3L04A 3M5DA 3KZMA 3KZKA 2G7MC 2FG6C
chains in the KnotProt database with same CATH superfamily
1E2HA 1OSNA 1KIMA 1KI3A 4IVPA 1DBIA 1P73A 1E2JA 1KI8A 4JBXA 1II9A 4JBYA 1OF1A 1E2KA 1P7CA 3F0TA 3L02A 3KZMA 1KI4A 2KI5A 1YVEI 1YRLA 1JS1X 3FSGA 4IVQA 3FR7A 3M4JA 3RDPA 1P72A 1QMGA 1E2LA 1E2PA 1VTKA 3KZKA 2G7MC 2FG6C 3L06A 2VTKA 3KZNA 3L05A 1F48A 1YH1A 3M5CA 1LNSA 1P75A 3M5DA 1GKUB 3KZOA 3VTKA 1R4MB 1R4NB 1KI7A 1E2MA 1P6XA 1E2NA 3M4NA 3KZCA 3FR8A 1QHIA 4IVRA 3L04A 1KI2A 1KI6A 2XTJA 1E2IA 1KI6B
chains in the KnotProt database with same CATH topology
1DBIA 3KZMA 3L02A 1JS1X 3FSGA 3M4JA 3KZKA 2G7MC 2FG6C 3L06A 3KZNA 3L05A 1GKUB 3M5CA 1YH1A 1LNSA 3M5DA 3KZOA 3M4NA 3KZCA 3L04A 2XTJA
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 3L06 A;  3KZN A;  3L05 A;  1YH1 A;  3KZC A;  1JS1 X;  3M4N A;  3L02 A;  3M5C A;  3M4J A;  3KZO A;  3L04 A;  3M5D A;  3KZM A;  3KZK A;  2G7M C;  2FG6 C; 
#chains in the KnotProt database with same CATH topology
 1E2H A;  1OSN A;  1KIM A;  1KI3 A;  4IVP A;  1DBI A;  1P73 A;  1E2J A;  1KI8 A;  4JBX A;  1II9 A;  4JBY A;  1OF1 A;  1E2K A;  1P7C A;  3F0T A;  3L02 A;  3KZM A;  1KI4 A;  2KI5 A;  1YVE I;  1YRL A;  1JS1 X;  3FSG A;  4IVQ A;  3FR7 A;  3M4J A;  3RDP A;  1P72 A;  1QMG A;  1E2L A;  1E2P A;  1VTK A;  3KZK A;  2G7M C;  2FG6 C;  3L06 A;  2VTK A;  3KZN A;  3L05 A;  1F48 A;  1YH1 A;  3M5C A;  1LNS A;  1P75 A;  3M5D A;  1GKU B;  3KZO A;  3VTK A;  1R4M B;  1R4N B;  1KI7 A;  1E2M A;  1P6X A;  1E2N A;  3M4N A;  3KZC A;  3FR8 A;  1QHI A;  4IVR A;  3L04 A;  1KI2 A;  1KI6 A;  2XTJ A;  1E2I A;  1KI6 B; 
#chains in the KnotProt database with same CATH homology
 1DBI A;  3KZM A;  3L02 A;  1JS1 X;  3FSG A;  3M4J A;  3KZK A;  2G7M C;  2FG6 C;  3L06 A;  3KZN A;  3L05 A;  1GKU B;  3M5C A;  1YH1 A;  1LNS A;  3M5D A;  3KZO A;  3M4N A;  3KZC A;  3L04 A;  2XTJ A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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