| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
41 | 236-440 | 205 | 1-235, 441-513 | 235 | 73 | knot | ||||
| view details |
 |
+31 | 268-385 | 118 | 1-242, 443-513 | 243-267, 386-442 | 242 | 71 | slipknot |
Chain Sequence |
ATTFDFDSSVFKKEKVTLSGHDEYIVRGGRNLFPLLPDAFKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLISDSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFPKNISVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSIALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVECLFRRYTESGMSEDLAYKNTVECITGVISKTISTKGMLALYNSLSEEGKKDFQAAYSASYYPSMDILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGEKVRSVRPAGDLGPLYPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIEAVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILSQQALVAVDNGAPINQDLISNFLSDPVHEAIGVCAQLRPSVDISVTADADFVRPELRQA
|
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
41 | 236-441 | 206 | 1-235, 442-511 | 235 | 70 | knot | ||||
|
|
+ 31 | 268-384 | 117 | 1-244, 443-511 | 245-267, 385-442 | 244 | 69 | slipknot |
| Fingerprint | Knot forming loop | Loop type | ||||
|---|---|---|---|---|---|---|
|
|
K 41 +31 | Chain closureAla83 <-> Ala595 ... Glu319 <-> Bridging ionMg601 <-> Asp315 ... Ala83 |
probabilistic |
Chain Sequence |
ATTFDFDSSVFKKEKVTLSGHDEYIVRGGRNLFPLLPDAFKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLISDSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFPKNISVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSIALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVECLFRRYTESGMSEDLAYKNTVECITGVISKTISTKGMLALYNSLSEEGKKDFQAAYSASYYPSMDILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGEKVRSVRPAGDLGPLYPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIEAVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILSQQALVAVDNGAPINQDLISNFLSDPVHEAIGVCAQLRPSVDISVTADADFVRPELRQA
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
4.1 | 235-450 | 216 | 1-234, 451-513 | 234 | 63 | knot | ||||
| view details |
 |
3.2 | 234-436 | 203 | 1-233 | 455-513 | 437-454 | 233 | 59 | slipknot | ||
| view details |
|
3.2 | 244-459 | 216 | 1-234, 488-513 | 235-243, 460-487 | 234 | 26 | slipknot | |||
| view details |
|
4.1 | 244-487 | 244 | 1-234, 493-513 | 235-243, 488-492 | 234 | 21 | slipknot | |||
| view details |
 |
2.3 | 245-436 | 192 | 1-233, 450-513 | 234-244, 437-449 | 233 | 64 | slipknot | |||
| view details |
 |
2.1 | 254-416 | 163 | 1-241, 438-513 | 242-253, 417-437 | 241 | 76 | slipknot | |||
| view details |
 |
3.1 | 274-389 | 116 | 1-243, 441-513 | 244-273, 390-440 | 243 | 73 | slipknot | |||
| view details |
|
2.1 | 270-440 | 171 | 1-244, 448-513 | 245-269, 441-447 | 244 | 66 | slipknot |
| sequence length |
513
|
| structure length |
513
|
| publication title |
The crystal structure of plant acetohydroxy acid isomeroreductase complexed with NADPH, two magnesium ions and a herbicidal transition state analog determined at 1.65 A resolution.
pubmed doi rcsb |
| molecule tags |
Oxidoreductase
|
| molecule keywords |
ACETOHYDROXY ACID ISOMEROREDUCTASE
|
| source organism |
Spinacia oleracea
|
| total genus |
 Genus: 210
|
| ec nomenclature |
ec
1.1.1.86: Ketol-acid reductoisomerase. |
| pdb deposition date | 1996-10-11 |
| KnotProt deposition date | 2018-10-20 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| I | PF01450 | IlvC | Acetohydroxy acid isomeroreductase, catalytic domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | NAD(P)-binding Rossmann-like Domain | ||
| Mainly Alpha | Orthogonal Bundle | N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | NAD(P)-binding Rossmann-like Domain |
#chains in the KnotProt database with same CATH superfamily 1YRL A; 3ULK A; 3FR8 A; 1QMG A; 1R4N B; 1R4M B; 1YVE I; 3FR7 A; #chains in the KnotProt database with same CATH topology 3M4J A; 1YRL A; 3L05 A; 3KZN A; 3RDP A; 2G7M C; 3FR8 A; 1P7C A; 4IVQ A; 1E2K A; 4JBY A; 1E2J A; 1KI6 A; 1QHI A; 1VTK A; 1KI4 A; 1P6X A; 3M5C A; 3KZM A; 1F48 A; 2FG6 C; 3M4N A; 3KZC A; 1KIM A; 1E2N A; 1KI6 B; 1DBI A; 1R4N B; 2KI5 A; 3L02 A; 1OSN A; 1LNS A; 1OF1 A; 1YVE I; 3L06 A; 1E2M A; 1YH1 A; 1JS1 X; 3FSG A; 1II9 A; 1P75 A; 1KI2 A; 1R4M B; 1E2L A; 3FR7 A; 1KI7 A; 4JBX A; 1KI8 A; 3VTK A; 4IVR A; 3F0T A; 3KZK A; 3ULK A; 1QMG A; 1E2P A; 1E2H A; 1KI3 A; 3KZO A; 2XTJ A; 3M5D A; 4IVP A; 1P73 A; 1GKU B; 1P72 A; 1E2I A; 2VTK A; 3L04 A; #chains in the KnotProt database with same CATH homology 1YRL A; 3ULK A; 3FR8 A; 1QMG A; 1R4N B; 1R4M B; 1YVE I; 3FR7 A;
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
