| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 175-240 | 66 | 1-174, 241-321 | 174 | 81 | knot |
Chain Sequence |
GSHMKKFTCVQDIGDLKSALAESFEIKKDRFKYVELGRNKTLLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYLGDNYGQILSTDRNWTVGDRQMAVTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLENLP
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
3.1 | 175-241 | 67 | 1-174, 242-321 | 174 | 80 | knot | ||||
| view details |
 |
2.1 | 171-237 | 67 | 1-7, 242-321 | 8-170, 238-241 | 7 | 80 | slipknot | |||
| view details |
|
3.1 | 176-287 | 112 | 1-174, 301-321 | 175-175, 288-300 | 174 | 21 | slipknot |
| sequence length |
321
|
| structure length |
321
|
| publication title |
Structure and catalytic mechanism of a novel N-succinyl-L-ornithine transcarbamylase in arginine biosynthesis of Bacteroides fragilis.
pubmed doi rcsb |
| molecule tags |
Transferase
|
| molecule keywords |
putative ornithine carbamoyltransferase
|
| source organism |
Bacteroides fragilis
|
| total genus |
 Genus: 114
|
| ec nomenclature |
ec
2.1.3.-: |
| pdb deposition date | 2005-12-21 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| C | PF00185 | OTCace | Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Rossmann fold | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Rossmann fold |
#chains in the KnotProt database with same CATH superfamily 3L02 A; 3L05 A; 3KZC A; 3M4J A; 3KZM A; 3M5D A; 3L06 A; 3L04 A; 3M5C A; 3KZO A; 3M4N A; 2FG6 C; 1YH1 A; 2G7M C; 3KZN A; 1JS1 X; 3KZK A; #chains in the KnotProt database with same CATH topology 3L05 A; 1GKU B; 1II9 A; 1KI2 A; 1KIM A; 1KI7 A; 1QHI A; 1E2N A; 1KI3 A; 1VTK A; 3M4N A; 1YVE I; 3KZN A; 1KI6 A; 2G7M C; 1KI6 B; 1KI4 A; 2KI5 A; 2XTJ A; 1F48 A; 4JBY A; 1P7C A; 1P72 A; 1LNS A; 3L04 A; 1E2L A; 1E2I A; 1YH1 A; 4IVQ A; 3FR8 A; 1JS1 X; 3KZK A; 1KI8 A; 1P73 A; 3FR7 A; 2VTK A; 1OSN A; 3L02 A; 3M4J A; 1E2H A; 1E2P A; 1P75 A; 3L06 A; 3M5C A; 3KZO A; 4JBX A; 1E2K A; 2FG6 C; 1R4M B; 4IVR A; 3RDP A; 3KZC A; 3F0T A; 3M5D A; 4IVP A; 1P6X A; 1E2M A; 1OF1 A; 3KZM A; 1R4N B; 1E2J A; 3VTK A; 1DBI A; 1QMG A; 3FSG A; 1YRL A; #chains in the KnotProt database with same CATH homology 3L05 A; 1GKU B; 3M4N A; 3KZN A; 2G7M C; 2XTJ A; 1LNS A; 3L04 A; 1YH1 A; 1JS1 X; 3KZK A; 3L02 A; 3M4J A; 3L06 A; 3M5C A; 3KZO A; 2FG6 C; 3KZC A; 3KZM A; 3M5D A; 1DBI A; 3FSG A;
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
