| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 273-388 | 116 | 1-248, 444-501 | 249-272, 389-443 | 248 | 58 | slipknot | |||
| view details |
 |
41 | 239-442 | 204 | 1-238, 443-501 | 238 | 58 | slipknot |
Chain Sequence |
AAMPSLDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVEALFRRYTEQGMDEEMAYKNTVEGITGIISKTISKKGMLEVYNSLTEEGKKEFNKAYSASFYPCMDILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGNIDQTRMWKVGEKVRSTRPENDLGPLHPFTAGVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAPRFDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAIEVCAELRPTVDISV
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
4.1 | 237-452 | 216 | 1-236, 453-501 | 236 | 49 | knot | ||||
| view details |
 |
3.2 | 236-439 | 204 | 1-235 | 458-501 | 440-457 | 235 | 44 | slipknot | ||
| view details |
|
3.2 | 245-461 | 217 | 1-236, 487-501 | 237-244, 462-486 | 236 | 15 | slipknot | |||
| view details |
|
3.2 | 245-486 | 242 | 1-236, 490-501 | 237-244, 487-489 | 236 | 12 | slipknot | |||
| view details |
|
3.2 | 246-462 | 217 | 1-244, 487-501 | 245-245, 463-486 | 244 | 15 | slipknot | |||
| view details |
|
3.2 | 246-486 | 241 | 1-244, 490-501 | 245-245, 487-489 | 244 | 12 | slipknot | |||
| view details |
 |
2.3 | 247-438 | 192 | 1-234, 452-501 | 235-246, 439-451 | 234 | 50 | slipknot | |||
| view details |
 |
2.1 | 259-391 | 133 | 1-237, 417-501 | 238-258, 392-416 | 237 | 85 | slipknot | |||
| view details |
 |
1.1 | 277-394 | 118 | 1-243, 440-501 | 244-276, 395-439 | 243 | 62 | slipknot | |||
| view details |
|
2.1 | 277-439 | 163 | 1-246, 441-501 | 247-276, 440-440 | 246 | 61 | slipknot | |||
| view details |
 |
3.1 | 269-392 | 124 | 1-258, 395-501 | 259-268, 393-394 | 258 | 107 | slipknot |
| sequence length |
501
|
| structure length |
501
|
| publication title |
Conformational changes in a plant ketol-acid reductoisomerase upon Mg(2+) and NADPH binding as revealed by two crystal structures
pubmed doi rcsb |
| molecule tags |
Oxidoreductase
|
| molecule keywords |
Putative ketol-acid reductoisomerase (Os05g0573700 protein)
|
| source organism |
Oryza sativa japonica group
|
| total genus |
 Genus: 183
|
| ec nomenclature |
ec
1.1.1.86: Ketol-acid reductoisomerase. ec 1.1.1.86: Ketol-acid reductoisomerase (NADP(+)). |
| pdb deposition date | 2009-01-08 |
| KnotProt deposition date | 2018-09-12 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01450 | IlvC | Acetohydroxy acid isomeroreductase, catalytic domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | NAD(P)-binding Rossmann-like Domain |
#chains in the KnotProt database with same CATH superfamily 1YVE I; 3FR8 A; 1R4N B; 3FR7 A; 1QMG A; 1R4M B; 1YRL A; 3ULK A; #chains in the KnotProt database with same CATH topology 1P73 A; 2G7M C; 1R4N B; 3KZO A; 1E2N A; 1F48 A; 1OF1 A; 3M5C A; 3RDP A; 3ULK A; 1DBI A; 1E2I A; 1KI6 A; 3M4N A; 1GKU B; 1KI8 A; 1P72 A; 1KI6 B; 1JS1 X; 1E2P A; 1E2J A; 3F0T A; 1YRL A; 2XTJ A; 2FG6 C; 3KZN A; 1YVE I; 1KI2 A; 3VTK A; 1E2M A; 2KI5 A; 3KZC A; 4JBY A; 1KIM A; 4IVP A; 3FSG A; 2VTK A; 3M5D A; 3KZM A; 1KI7 A; 1VTK A; 1R4M B; 3FR8 A; 1KI4 A; 1E2K A; 1OSN A; 1P6X A; 3KZK A; 3L06 A; 1II9 A; 1LNS A; 1E2H A; 1YH1 A; 3M4J A; 3L04 A; 1E2L A; 3L02 A; 3L05 A; 4IVR A; 3FR7 A; 1QMG A; 1KI3 A; 1P75 A; 4IVQ A; 4JBX A; 1QHI A; 1P7C A; #chains in the KnotProt database with same CATH homology 1YVE I; 3FR8 A; 1R4N B; 3FR7 A; 1QMG A; 1R4M B; 1YRL A; 3ULK A;
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
