3KZCA

Crystal structure of n-acetyl-l-ornithine transcarbamylase
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 174-251 78 1-173, 252-332 173 81 knot
Chain Sequence
LKHFLNTQDWSRAELDALLTQAALFKRNKLGSELKGKSIALVFFNPSMRTRTSFELGAFQLGGHAVVLQPG----PIEFNLGTVMDGDTEEHIAEVARVLGRYVDLIGVRAFPKFVDWSKDREDQVLKSFAKYSPVPVINMETITHPCQELAHALALQEHFGTPDLRGKKYVLTWTYHPKPLNTAVANSALTIATRMGMDVTLLCPTPDYILDERYMDWAAQNVAESGGSLQVSHDIDSAYAGADVVYAKSWGALPFFGNWEPEKPIRDQYQHFIVDERKMALTNNGVFSHCLPLRRNVKATDAVMDSPNCIAIDEAENRLHVQKAIMAALV
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1 170-247 78 1-169, 248-328 169 81 knot
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2.1 166-244 79 1-165 250-328 245-249 165 79 slipknot
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2.1 171-285 115 1-169, 293-328 170-170, 286-292 169 36 slipknot
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2.1 171-292 122 1-169, 297-328 170-170, 293-296 169 32 slipknot
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3.1 171-301 131 1-169, 306-328 170-170, 302-305 169 23 slipknot
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2.1 171-305 135 1-169, 308-328 170-170, 306-307 169 21 slipknot
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2.1 171-308 138 1-169, 313-328 170-170, 309-312 169 16 slipknot
sequence length 332
structure length 328
publication title Crystal structure of N-acetylornithine transcarbamylase from Xanthomonas campestris: a novel enzyme in a new arginine biosynthetic pathway found in several eubacteria.
pubmed doi rcsb
molecule tags Transferase
molecule keywords N-acetylornithine carbamoyltransferase
source organism Xanthomonas campestris pv. campestris
missing residues 72-75
total genus Genus: 118
ec nomenclature ec 2.1.3.9: N-acetylornithine carbamoyltransferase.
pdb deposition date 2009-12-08
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00185 OTCace Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.50.1370 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Rossmann fold 3kzcA01
3.40.50.1370 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Rossmann fold 3kzcA02
3M4JA 3KZKA 3M4NA 2G7MC 3L06A 1JS1X 3KZMA 3KZCA 3M5CA 2FG6C 3M5DA 3KZOA 3KZNA 1YH1A 3L02A 3L05A 3L04A
chains in the KnotProt database with same CATH superfamily
1GKUB 4JBXA 1KI8A 2G7MC 3L06A 4IVRA 1QHIA 4IVQA 1VTKA 3FSGA 3M5CA 3FR8A 1KI6B 2XTJA 4IVPA 1E2LA 3KZMA 1YRLA 3KZCA 1KI6A 1KIMA 1F48A 1KI7A 1P75A 1E2IA 1E2KA 1P7CA 1II9A 1YH1A 1KI2A 1P72A 2KI5A 3M4JA 1OF1A 3VTKA 1E2PA 1OSNA 1P6XA 2FG6C 1KI3A 1P73A 4JBYA 3M5DA 1YVEI 3L02A 3L05A 3F0TA 1R4NB 3M4NA 1E2JA 2VTKA 1R4MB 3KZKA 3FR7A 1E2MA 1KI4A 1E2NA 1JS1X 1DBIA 1QMGA 3KZOA 3KZNA 3RDPA 1E2HA 1LNSA 3L04A
chains in the KnotProt database with same CATH topology
1GKUB 2G7MC 3L06A 3FSGA 3M5CA 2XTJA 3KZMA 3KZCA 3L04A 1YH1A 3M4JA 2FG6C 3M5DA 3L02A 3L05A 3KZKA 1JS1X 1DBIA 3KZOA 3KZNA 1LNSA 3M4NA
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 3M4J A;  3KZK A;  3M4N A;  2G7M C;  3L06 A;  1JS1 X;  3KZM A;  3KZC A;  3M5C A;  2FG6 C;  3M5D A;  3KZO A;  3KZN A;  1YH1 A;  3L02 A;  3L05 A;  3L04 A; 
#chains in the KnotProt database with same CATH topology
 1GKU B;  4JBX A;  1KI8 A;  2G7M C;  3L06 A;  4IVR A;  1QHI A;  4IVQ A;  1VTK A;  3FSG A;  3M5C A;  3FR8 A;  1KI6 B;  2XTJ A;  4IVP A;  1E2L A;  3KZM A;  1YRL A;  3KZC A;  1KI6 A;  1KIM A;  1F48 A;  1KI7 A;  1P75 A;  1E2I A;  1E2K A;  1P7C A;  1II9 A;  1YH1 A;  1KI2 A;  1P72 A;  2KI5 A;  3M4J A;  1OF1 A;  3VTK A;  1E2P A;  1OSN A;  1P6X A;  2FG6 C;  1KI3 A;  1P73 A;  4JBY A;  3M5D A;  1YVE I;  3L02 A;  3L05 A;  3F0T A;  1R4N B;  3M4N A;  1E2J A;  2VTK A;  1R4M B;  3KZK A;  3FR7 A;  1E2M A;  1KI4 A;  1E2N A;  1JS1 X;  1DBI A;  1QMG A;  3KZO A;  3KZN A;  3RDP A;  1E2H A;  1LNS A;  3L04 A; 
#chains in the KnotProt database with same CATH homology
 1GKU B;  2G7M C;  3L06 A;  3FSG A;  3M5C A;  2XTJ A;  3KZM A;  3KZC A;  3L04 A;  1YH1 A;  3M4J A;  2FG6 C;  3M5D A;  3L02 A;  3L05 A;  3KZK A;  1JS1 X;  1DBI A;  3KZO A;  3KZN A;  1LNS A;  3M4N A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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