3KZMA

Crystal structure of n-acetyl-l-ornithine transcarbamylase complexed with carbamyl phosphate
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 174-251 78 1-173, 252-332 173 81 knot
Chain Sequence
LKHFLNTQDWSRAELDALLTQAALFKRNKLGSELKGKSIALVFFNPSMRTRTSFELGAFQLGGHAVVLQPGKDAWPIEFNLGTVMDGDTEEHIAEVARVLGRYVDLIGVRAFPKFVDWSKDREDQVLKSFAKYSPVPVINMETITHPCQELAHALALQEHFGTPDLRGKKYVLTWTYHPKPLNTAVANSALTIATRMGMDVTLLCPTPDYILDERYMDWAAQNVAESGGSLQVSHDIDSAYAGADVVYAKSWGALPFFGNWEPEKPIRDQYQHFIVDERKMALTNNGVFSHCLPLRRNVKATDAVMDSPNCIAIDEAENRLHVQKAIMAALV
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 174-251 78 1-173, 252-332 173 81 knot
view details
2.1 33-248 216 1-32 255-332 249-254 32 78 slipknot
view details
2.1 169-248 80 1-33, 252-332 34-168, 249-251 33 81 slipknot
view details
2.1 175-283 109 1-173, 290-332 174-174, 284-289 173 43 slipknot
view details
3.1 175-289 115 1-173, 294-332 174-174, 290-293 173 39 slipknot
sequence length 332
structure length 332
publication title Structures of N-acetylornithine transcarbamoylase from Xanthomonas campestris complexed with substrates and substrate analogs imply mechanisms for substrate binding and catalysis.
pubmed doi rcsb
molecule tags Transferase
molecule keywords N-acetylornithine carbamoyltransferase
source organism Xanthomonas campestris pv. campestris
total genus Genus: 125
ec nomenclature ec 2.1.3.9: N-acetylornithine carbamoyltransferase.
pdb deposition date 2009-12-08
KnotProt deposition date 2014-08-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00185 OTCace Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.50.1370 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Rossmann fold 3kzmA01
3.40.50.1370 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Rossmann fold 3kzmA02
3KZKA 1JS1X 3M5CA 3L02A 3M5DA 2G7MC 1YH1A 3L05A 3KZOA 3KZMA 3L06A 3M4NA 2FG6C 3KZCA 3KZNA 3M4JA 3L04A
chains in the KnotProt database with same CATH superfamily
1KI2A 1KI4A 1KIMA 1P72A 3F0TA 3L02A 1KI7A 1KI6A 3M5DA 1OSNA 3L05A 3VTKA 1P7CA 1KI6B 3KZCA 1YRLA 1E2IA 3FR7A 3KZNA 3L04A 4IVRA 3KZKA 4JBXA 3M5CA 1P73A 4IVQA 1GKUB 4JBYA 1KI8A 3KZOA 3M4NA 2XTJA 1R4NB 1P6XA 1E2PA 2KI5A 1E2HA 1E2LA 1JS1X 2VTKA 1E2JA 1E2KA 1VTKA 1P75A 1QHIA 1OF1A 1DBIA 1YH1A 1F48A 3KZMA 3L06A 2FG6C 1R4MB 3M4JA 1E2MA 1QMGA 1E2NA 1YVEI 4IVPA 3FSGA 2G7MC 1LNSA 1KI3A 1II9A 3FR8A 3RDPA
chains in the KnotProt database with same CATH topology
3L02A 3M5DA 3L05A 3KZCA 3KZNA 3L04A 3KZKA 3M5CA 1GKUB 3KZOA 3M4NA 2XTJA 1JS1X 1DBIA 1YH1A 3KZMA 3L06A 2FG6C 3M4JA 3FSGA 2G7MC 1LNSA
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 3KZK A;  1JS1 X;  3M5C A;  3L02 A;  3M5D A;  2G7M C;  1YH1 A;  3L05 A;  3KZO A;  3KZM A;  3L06 A;  3M4N A;  2FG6 C;  3KZC A;  3KZN A;  3M4J A;  3L04 A; 
#chains in the KnotProt database with same CATH topology
 1KI2 A;  1KI4 A;  1KIM A;  1P72 A;  3F0T A;  3L02 A;  1KI7 A;  1KI6 A;  3M5D A;  1OSN A;  3L05 A;  3VTK A;  1P7C A;  1KI6 B;  3KZC A;  1YRL A;  1E2I A;  3FR7 A;  3KZN A;  3L04 A;  4IVR A;  3KZK A;  4JBX A;  3M5C A;  1P73 A;  4IVQ A;  1GKU B;  4JBY A;  1KI8 A;  3KZO A;  3M4N A;  2XTJ A;  1R4N B;  1P6X A;  1E2P A;  2KI5 A;  1E2H A;  1E2L A;  1JS1 X;  2VTK A;  1E2J A;  1E2K A;  1VTK A;  1P75 A;  1QHI A;  1OF1 A;  1DBI A;  1YH1 A;  1F48 A;  3KZM A;  3L06 A;  2FG6 C;  1R4M B;  3M4J A;  1E2M A;  1QMG A;  1E2N A;  1YVE I;  4IVP A;  3FSG A;  2G7M C;  1LNS A;  1KI3 A;  1II9 A;  3FR8 A;  3RDP A; 
#chains in the KnotProt database with same CATH homology
 3L02 A;  3M5D A;  3L05 A;  3KZC A;  3KZN A;  3L04 A;  3KZK A;  3M5C A;  1GKU B;  3KZO A;  3M4N A;  2XTJ A;  1JS1 X;  1DBI A;  1YH1 A;  3KZM A;  3L06 A;  2FG6 C;  3M4J A;  3FSG A;  2G7M C;  1LNS A; 
...loading similar chains, please wait...
similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling