3M4NA

Crystal structure of n-acetyl-l-ornithine transcarbamylase k302a mutant complexed with palao
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 174-251 78 1-173, 252-332 173 81 knot
Chain Sequence
LKHFLNTQDWSRAELDALLTQAALFKRNKLGSELKGKSIALVFFNPSMRTRTSFELGAFQLGGHAVVLQPGKDAWPIEFNLGTVMDGDTEEHIAEVARVLGRYVDLIGVRAFPKFVDWSKDREDQVLKSFAKYSPVPVINMETITHPCQELAHALALQEHFGTPDLRGKKYVLTWTYHPKPLNTAVANSALTIATRMGMDVTLLCPTPDYILDERYMDWAAQNVAESGGSLQVSHDIDSAYAGADVVYAKSWGALPFFGNWEPEKPIRDQYQHFIVDERKMALTNNGVFSHCLPLRRNVAATDAVMDSPNCIAIDEAENRLHVQKAIMAALV
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 173-251 79 1-172, 252-332 172 81 knot
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2.1 161-248 88 1-160 254-332 249-253 160 79 slipknot
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3.1 174-251 78 252-332 1-172 173-173 172 80 slipknot
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3.1 175-276 102 1-173, 283-332 174-174, 277-282 173 50 slipknot
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2.1 175-283 109 1-173, 290-332 174-174, 284-289 173 43 slipknot
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2.1 175-307 133 1-173, 324-332 174-174, 308-323 173 9 slipknot
sequence length 332
structure length 332
publication title Reversible post-translational carboxylation modulates the enzymatic activity of N-acetyl-L-ornithine transcarbamylase.
pubmed doi rcsb
molecule tags Transferase
molecule keywords N-acetylornithine carbamoyltransferase
source organism Xanthomonas campestris pv. campestris
total genus Genus: 134
ec nomenclature ec 2.1.3.9: N-acetylornithine carbamoyltransferase.
pdb deposition date 2010-03-11
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00185 OTCace Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.50.1370 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Rossmann fold 3m4nA01
3.40.50.1370 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Rossmann fold 3m4nA02
3L06A 3KZNA 3L05A 1YH1A 3KZCA 1JS1X 3M4NA 3L02A 3M5CA 3M4JA 3KZOA 3L04A 3M5DA 3KZMA 3KZKA 2G7MC 2FG6C
chains in the KnotProt database with same CATH superfamily
1E2HA 1OSNA 1KIMA 1KI3A 4IVPA 1DBIA 1P73A 1E2JA 1KI8A 4JBXA 1II9A 4JBYA 1OF1A 1E2KA 1P7CA 3F0TA 3L02A 3KZMA 1KI4A 2KI5A 1YVEI 1YRLA 1JS1X 3FSGA 4IVQA 3FR7A 3M4JA 3RDPA 1P72A 1QMGA 1E2LA 1E2PA 1VTKA 3KZKA 2G7MC 2FG6C 3L06A 2VTKA 3KZNA 3L05A 1F48A 1YH1A 3M5CA 1LNSA 1P75A 3M5DA 1GKUB 3KZOA 3VTKA 1R4MB 1R4NB 1KI7A 1E2MA 1P6XA 1E2NA 3M4NA 3KZCA 3FR8A 1QHIA 4IVRA 3L04A 1KI2A 1KI6A 2XTJA 1E2IA 1KI6B
chains in the KnotProt database with same CATH topology
1DBIA 3KZMA 3L02A 1JS1X 3FSGA 3M4JA 3KZKA 2G7MC 2FG6C 3L06A 3KZNA 3L05A 1GKUB 3M5CA 1YH1A 1LNSA 3M5DA 3KZOA 3M4NA 3KZCA 3L04A 2XTJA
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 3L06 A;  3KZN A;  3L05 A;  1YH1 A;  3KZC A;  1JS1 X;  3M4N A;  3L02 A;  3M5C A;  3M4J A;  3KZO A;  3L04 A;  3M5D A;  3KZM A;  3KZK A;  2G7M C;  2FG6 C; 
#chains in the KnotProt database with same CATH topology
 1E2H A;  1OSN A;  1KIM A;  1KI3 A;  4IVP A;  1DBI A;  1P73 A;  1E2J A;  1KI8 A;  4JBX A;  1II9 A;  4JBY A;  1OF1 A;  1E2K A;  1P7C A;  3F0T A;  3L02 A;  3KZM A;  1KI4 A;  2KI5 A;  1YVE I;  1YRL A;  1JS1 X;  3FSG A;  4IVQ A;  3FR7 A;  3M4J A;  3RDP A;  1P72 A;  1QMG A;  1E2L A;  1E2P A;  1VTK A;  3KZK A;  2G7M C;  2FG6 C;  3L06 A;  2VTK A;  3KZN A;  3L05 A;  1F48 A;  1YH1 A;  3M5C A;  1LNS A;  1P75 A;  3M5D A;  1GKU B;  3KZO A;  3VTK A;  1R4M B;  1R4N B;  1KI7 A;  1E2M A;  1P6X A;  1E2N A;  3M4N A;  3KZC A;  3FR8 A;  1QHI A;  4IVR A;  3L04 A;  1KI2 A;  1KI6 A;  2XTJ A;  1E2I A;  1KI6 B; 
#chains in the KnotProt database with same CATH homology
 1DBI A;  3KZM A;  3L02 A;  1JS1 X;  3FSG A;  3M4J A;  3KZK A;  2G7M C;  2FG6 C;  3L06 A;  3KZN A;  3L05 A;  1GKU B;  3M5C A;  1YH1 A;  1LNS A;  3M5D A;  3KZO A;  3M4N A;  3KZC A;  3L04 A;  2XTJ A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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