Found 242 chains in Knotted chains table. Displaying 151 - 242. Applied filters: Probabilistic

Search results query: 3-Layer(aba) Sandwich

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#pdbid|chain|deposition date|is S/K-not|(slip)knot types;
      
  1yve|I|2018-10-20|K|4.1 +3.1;
  1qmg|A|2018-10-20|S|4.1 +3.1;
  3fr7|A|2018-10-19|K|4.1 +3.1;
  4cne|B|2018-09-16|K|+3.1;
  4cnf|B|2018-09-16|K|+3.1;
  4cng|B|2018-09-16|K|+3.1;
  3fr8|A|2018-09-12|S|4.1 +3.1;
  1j85|A|2018-08-14|K|+3.1;
  1wog|A|2015-02-05|S|+3.1;
  3bdg|B|2014-10-08|S|+3.1;
  1ki6|B|2014-10-08|S|+3.1;
  1woi|A|2014-10-08|S|+3.1 +3.1 +3.1;
  1gq6|A|2014-10-08|S|+3.1 +3.1 +3.1;
  1gq7|A|2014-10-08|S|+3.1 +3.1 +3.1;
  1woh|A|2014-10-08|S|+3.1;
  3p12|A|2014-08-20|S|+3.1;
  3ihr|A|2014-08-20|K|-5.2 -3.1 -3.1;
  2ga3|A|2014-08-19|S|+3.1;
  4jby|A|2014-08-19|S|+3.1;
  4jbx|A|2014-08-19|S|+3.1;
  4ivr|A|2014-08-19|S|+3.1;
  4ivq|A|2014-08-19|S|+3.1;
  4ivp|A|2014-08-19|S|+3.1;
  3m8y|A|2014-08-19|S|+3.1;
  3m8w|A|2014-08-19|S|+3.1;
  3uo0|A|2014-08-19|S|+3.1;
  3uny|A|2014-08-19|S|+3.1;
  3un2|A|2014-08-19|S|+3.1;
  2len|A|2014-08-19|K|-5.2 -3.1 -3.1;
  3axz|A|2014-08-19|K|+3.1;
  4ig6|A|2014-08-19|K|+3.1;
  4h3y|A|2014-08-19|K|+3.1;
  3kzm|A|2014-08-19|K|+3.1;
  4fdj|A|2014-08-19|S|+3.1;
  3rdp|A|2014-08-18|S|+3.1;
  3tx0|A|2014-08-18|S|+3.1;
  3twz|A|2014-08-18|S|+3.1;
  1ogf|A|2014-08-18|S|+3.1;
  1oge|A|2014-08-18|S|+3.1;
  3szz|A|2014-08-18|S|+3.1;
  3t00|A|2014-08-18|S|+3.1;
  3t01|A|2014-08-18|S|+3.1;
  1uch|A|2014-08-13|K|-5.2 -3.1 -3.1;
  1uak|A|2014-07-31|K|+3.1;
  1aja|A|2014-07-31|S|+3.1;
  1ajb|A|2014-07-31|S|+3.1;
  1ajc|A|2014-07-31|S|+3.1;
  1ajd|A|2014-07-31|S|+3.1;
  1ali|A|2014-07-31|S|+3.1;
  1alj|A|2014-07-31|S|+3.1;
  1alk|A|2014-07-31|S|+3.1;
  1ani|A|2014-07-31|S|+3.1;
  1anj|A|2014-07-31|S|+3.1;
  1auk|A|2014-07-31|S|+3.1;
  1b8j|A|2014-07-31|S|+3.1;
  1cmx|A|2014-07-31|K|-3.1;
  1e1z|P|2014-07-31|S|+3.1;
  1e2h|A|2014-07-31|S|+3.1;
  1e2i|A|2014-07-31|S|+3.1;
  1e2j|A|2014-07-31|S|+3.1;
  1e2k|A|2014-07-31|S|+3.1;
  1e2l|A|2014-07-31|S|+3.1;
  1e2m|A|2014-07-31|S|+3.1;
  1e2n|A|2014-07-31|S|+3.1;
  1e2p|A|2014-07-31|S|+3.1;
  1e2s|P|2014-07-31|S|+3.1;
  1e33|P|2014-07-31|S|+3.1;
  1e3c|P|2014-07-31|S|+3.1;
  1ed8|A|2014-07-31|S|+3.1;
  1ed9|A|2014-07-31|S|+3.1;
  1ei6|A|2014-07-31|S|+3.1;
  1ejj|A|2014-07-31|S|+3.1;
  1elx|A|2014-07-31|S|+3.1;
  1ely|A|2014-07-31|S|+3.1;
  1elz|A|2014-07-31|S|+3.1;
  1eqj|A|2014-07-31|S|+3.1;
  1ew2|A|2014-07-31|S|+3.1;
  1ew8|A|2014-07-31|S|+3.1;
  1ew9|A|2014-07-31|S|+3.1;
  1f48|A|2014-07-31|K|+3.1;
  1fsu|A|2014-07-31|S|+3.1;
  1gz0|A|2014-07-31|K|+3.1;
  1hdh|A|2014-07-31|S|+3.1;
  1hjk|A|2014-07-31|S|+3.1;
  1hqa|A|2014-07-31|S|+3.1;
  1hyn|P|2014-07-31|S|-3.1;
  1js1|X|2014-07-31|K|+3.1;
  1k3r|A|2014-07-31|K|+3.1;
  1k7h|A|2014-07-31|S|+3.1;
  1kh4|A|2014-07-31|S|+3.1;
  1kh5|A|2014-07-31|S|+3.1;
  1kh7|A|2014-07-31|S|+3.1;
  1kh9|A|2014-07-31|S|+3.1;
  1khj|A|2014-07-31|S|+3.1;
  1khk|A|2014-07-31|S|+3.1;
  1khl|A|2014-07-31|S|+3.1;
  1khn|A|2014-07-31|S|+3.1;
  1ki2|A|2014-07-31|S|+3.1;
  1ki3|A|2014-07-31|S|+3.1;
  1ki4|A|2014-07-31|S|+3.1;
  1ki6|A|2014-07-31|S|+3.1;
  1ki7|A|2014-07-31|S|+3.1;
  1ki8|A|2014-07-31|S|+3.1;
  1kim|A|2014-07-31|S|+3.1;
  1lns|A|2014-07-31|S|+3.1 +3.1 +3.1;
  1mxi|A|2014-07-31|K|+3.1;
  1n2k|A|2014-07-31|S|+3.1;
  1n2l|A|2014-07-31|S|+3.1;
  1ns5|A|2014-07-31|K|+3.1;
  1nxz|A|2014-07-31|K|+3.1;
  1o6d|A|2014-07-31|K|+3.1;
  1o98|A|2014-07-31|S|+3.1;
  1o99|A|2014-07-31|S|+3.1;
  1of1|A|2014-07-31|S|+3.1;
  1ogc|A|2014-07-31|S|+3.1;
  1ogd|A|2014-07-31|S|+3.1;
  1osn|A|2014-07-31|S|+3.1;
  1p49|A|2014-07-31|S|+3.1;
  1p6x|A|2014-07-31|S|+3.1;
  1p72|A|2014-07-31|S|+3.1;
  1p73|A|2014-07-31|S|+3.1;
  1p75|A|2014-07-31|S|+3.1;
  1p7c|A|2014-07-31|S|+3.1;
  1p9p|A|2014-07-31|K|+3.1;
  1qhi|A|2014-07-31|S|+3.1;
  1shn|A|2014-07-31|S|+3.1;
  1shq|A|2014-07-31|S|+3.1;
  1to0|A|2014-07-31|K|+3.1;
  1uaj|A|2014-07-31|K|+3.1;
  1ual|A|2014-07-31|K|+3.1;
  1uam|A|2014-07-31|K|+3.1;
  1ura|A|2014-07-31|S|+3.1;
  1urb|A|2014-07-31|S|+3.1;
  1v2x|A|2014-07-31|K|+3.1;
  1v6z|A|2014-07-31|K|+3.1;
  1vh0|A|2014-07-31|K|+3.1;
  1vhk|A|2014-07-31|K|+3.1;
  1vhy|A|2014-07-31|K|+3.1;
  1vtk|A|2014-07-31|S|+3.1;
  1x7o|A|2014-07-31|K|+3.1;
  1x7p|A|2014-07-31|K|+3.1;
  1xd3|A|2014-07-31|K|-5.2 -3.1 -3.1;
  1y6v|A|2014-07-31|S|+3.1;
  1y7a|A|2014-07-31|S|+3.1;
  1yh1|A|2014-07-31|K|+3.1;
  1yrl|A|2014-07-31|K|4.1 +3.1;
  1zeb|A|2014-07-31|S|+3.1;
  1zed|A|2014-07-31|S|+3.1;
  1zef|A|2014-07-31|S|+3.1;
  1zjr|A|2014-07-31|K|+3.1;
  2anh|A|2014-07-31|S|+3.1;
  2cx8|A|2014-07-31|K|+3.1;
  2etl|A|2014-07-31|K|-5.2 -3.1 -3.1;
  2fg6|C|2014-07-31|K|+3.1;
  2g7m|C|2014-07-31|K|+3.1;
  2g9y|A|2014-07-31|S|+3.1;
  2glq|A|2014-07-31|S|+3.1;
  2ha8|A|2014-07-31|K|+3.1;
  2i6d|A|2014-07-31|K|+3.1;
  2ify|A|2014-07-31|S|+3.1;
  2ki5|A|2014-07-31|S|+3.1;
  2o3a|A|2014-07-31|K|+3.1;
  2ob5|A|2014-07-31|S|+3.1;
  2qmm|A|2014-07-31|K|+3.1;
  2qwv|A|2014-07-31|K|+3.1;
  2qzu|A|2014-07-31|S|+3.1;
  2vtk|A|2014-07-31|S|+3.1;
  2wcu|A|2014-07-31|S|+3.1;
  2wcv|A|2014-07-31|S|+3.1;
  2xtj|A|2014-07-31|S|+3.1;
  2yy8|A|2014-07-31|K|+3.1;
  2z0y|A|2014-07-31|K|+3.1;
  3a7s|A|2014-07-31|K|-5.2 -3.1 -3.1;
  3ai9|X|2014-07-31|K|+3.1;
  3aia|A|2014-07-31|K|+3.1;
  3bdf|A|2014-07-31|S|+3.1;
  3bdg|A|2014-07-31|S|+3.1;
  3bdh|A|2014-07-31|S|+3.1;
  3cmr|A|2014-07-31|S|+3.1;
  3dcm|X|2014-07-31|K|+3.1;
  3dpc|A|2014-07-31|S|+3.1;
  3dyc|A|2014-07-31|S|+3.1;
  3e5y|A|2014-07-31|K|+3.1;
  3e7n|A|2014-07-31|S|+3.1;
  3ed4|A|2014-07-31|S|+3.1;
  3f0t|A|2014-07-31|S|+3.1;
  3fsg|A|2014-07-31|S|+3.1;
  3gyq|A|2014-07-31|K|+3.1;
  3ic6|A|2014-07-31|K|+3.1;
  3ief|A|2014-07-31|K|+3.1;
  3ifw|A|2014-07-31|K|-5.2 -3.1 -3.1;
  3igy|B|2014-07-31|S|+3.1;
  3igz|B|2014-07-31|S|+3.1;
  3ilk|A|2014-07-31|K|+3.1;
  3irt|A|2014-07-31|K|-5.2 -3.1 -3.1;
  3knu|A|2014-07-31|K|+3.1;
  3kty|A|2014-07-31|K|+3.1;
  3kvf|A|2014-07-31|K|-5.2 -3.1 -3.1;
  3kw5|A|2014-07-31|K|-5.2 -3.1 -3.1;
  3ky7|A|2014-07-31|K|+3.1;
  3kzc|A|2014-07-31|K|+3.1;
  3kzk|A|2014-07-31|K|+3.1;
  3kzn|A|2014-07-31|K|+3.1;
  3kzo|A|2014-07-31|K|+3.1;
  3l02|A|2014-07-31|K|+3.1;
  3l04|A|2014-07-31|K|+3.1;
  3l05|A|2014-07-31|K|+3.1;
  3l06|A|2014-07-31|K|+3.1;
  3l8u|A|2014-07-31|K|+3.1;
  3m4j|A|2014-07-31|K|+3.1;
  3m4n|A|2014-07-31|K|+3.1;
  3m5c|A|2014-07-31|K|+3.1;
  3m5d|A|2014-07-31|K|+3.1;
  3m7v|A|2014-07-31|S|+3.1;
  3m8z|A|2014-07-31|S|+3.1;
  3mk0|A|2014-07-31|S|+3.1;
  3mk1|A|2014-07-31|S|+3.1;
  3mk2|A|2014-07-31|S|+3.1;
  3mvk|A|2014-07-31|S|+3.1;
  3n4j|A|2014-07-31|K|+3.1;
  3n4k|A|2014-07-31|K|+3.1;
  3nk6|A|2014-07-31|K|+3.1;
  3nk7|A|2014-07-31|K|+3.1;
  3nvl|A|2014-07-31|S|+3.1;
  3onp|A|2014-07-31|K|+3.1;
  3ot9|A|2014-07-31|S|+3.1;
  3p13|A|2014-07-31|S|+3.1;
  3quv|A|2014-07-31|K|+3.1;
  3rii|A|2014-07-31|K|-5.2 -3.1 -3.1;
  3ris|A|2014-07-31|K|-5.2 -3.1 -3.1;
  3szy|A|2014-07-31|S|+3.1;
  3t02|A|2014-07-31|S|+3.1;
  3un3|A|2014-07-31|S|+3.1;
  3un5|A|2014-07-31|S|+3.1;
  3vtk|A|2014-07-31|S|+3.1;
  4a34|A|2014-07-31|S|+3.1;
  4dm9|A|2014-07-31|K|-5.2 -3.1 -3.1;
  4dz4|A|2014-07-31|S|+3.1;
  4e8b|A|2014-07-31|K|+3.1;
  4fak|A|2014-07-31|K|+3.1;
  4fdi|A|2014-07-31|S|+3.1;
  4h3z|A|2014-07-31|K|+3.1;
Knot types Knot loop types pdb Title
S +31 2anhA Alkaline phosphatase (d153h)
K +31 2cx8A Crystal structure of methyltransferase with ligand(sah)
K -52 -31 -31 2etlA Crystal structure of ubiquitin carboxy-terminal hydrolase l1 (uch-l1)
K +31 2fg6C N-succinyl-l-ornithine transcarbamylase from b. fragilis complexed with sulfate and n-succinyl-l-norvaline
K +31 2g7mC Crystal structure of b. fragilis n-succinylornithine transcarbamylase p90e mutant complexed with carbamoyl phosphate and n-acetylnorvaline
S +31 2g9yA Structure of s102t e. coli alkaline phosphatase in presence of phosphate at 2.00 a resolution
S +31 2glqA X-ray structure of human alkaline phosphatase in complex with strontium
K +31 2ha8A Methyltransferase domain of human tar (hiv-1) rna binding protein 1
K +31 2i6dA The structure of a putative rna methyltransferase of the trmh family from porphyromonas gingivalis.
S +31 2ifyA Structure of bacillus anthracis cofactor-independent phosphoglucerate mutase
S +31
1
2ki5A Herpes simplex type-1 thymidine kinase in complex with the drug aciclovir at 1.9a resolution
K +31
1
2o3aA Crystal structure of a protein af_0751 from archaeoglobus fulgidus
S +31 2ob5A Crystal structure of protein atu2016, putative sugar binding protein
K +31 2qmmA Crystal structure of apc86534.1 (c-terminal domain of ncbi aab90184.1; pfam big 123.1)
K +31
1
2qwvA Crystal structure of unknown function protein vca1059
S +31 2qzuA Crystal structure of the putative sulfatase yidj from bacteroides fragilis. northeast structural genomics consortium target bfr123
S +31
1
2vtkA Thymidine kinase from herpes simplex virus type 1 in complex with adp and deoxythymidine
S +31 2wcuA Crystal structure of mammalian fucu
S +31
1
2wcvA Crystal structure of bacterial fucu
S +31
1
2xtjA The crystal structure of pcsk9 in complex with 1d05 fab
K +31 2yy8A Crystal structure of archaeal trna-methylase for position 56 (atrm56) from pyrococcus horikoshii, complexed with s-adenosyl-l-methionine
K +31 2z0yA Crystal structure of ttha0657-sam complex
K -52 -31 -31
2
3a7sA Catalytic domain of uch37
K +31 3ai9X Crystal structure of duf358 protein reveals a putative spout-class rrna methyltransferase
K +31 3aiaA Crystal structure of duf358 reveals a putative spout-class methltransferase
S +31
1
3bdfA Crystal structure of metal-free e. coli alkaline phosphatase (t155v)
S +31
1
3bdgA Crystal structure of wild-type/t155v mixed dimer of e. coli alkaline phosphatase
S +31 3bdhA Crystal structure of zinc-deficient wild-type e. coli alkaline phosphatase
S +31 3cmrA E. coli alkaline phosphatase mutant r166s in complex with phosphate
K +31 3dcmX Crystal structure of the thermotoga maritima spout family rna-methyltransferase protein tm1570 in complex with s-adenosyl-l-methionine
S +31 3dpcA Structure of e.coli alkaline phosphatase mutant in complex with a phosphorylated peptide
S +31 3dycA Structure of e322y alkaline phosphatase in complex with inorganic phosphate
K +31 3e5yA Crystal structure of trmh family rna methyltransferase from burkholderia pseudomallei
S +31 3e7nA Crystal structure of d-ribose high-affinity transport system from salmonella typhimurium lt2
S +31 3ed4A Crystal structure of putative arylsulfatase from escherichia coli
S +31
1
3f0tA Crystal structure of thymidine kinase from herpes simplex virus type 1 in complex with n-methyl-dhbt
S +31 3fsgA Crystal structure of alpha/beta superfamily hydrolase from oenococcus oeni psu-1
K +31 3gyqA Structure of the thiostrepton-resistance methyltransferase s-adenosyl-l-methionine complex
K +31
1
3ic6A Crystal structure of putative methylase family protein from neisseria gonorrhoeae
K +31 3iefA Crystal structure of trna guanine-n1-methyltransferase from bartonella henselae using mpcs.
K -52 -31 -31 3ifwA Crystal structure of the s18y variant of ubiquitin carboxy terminal hydrolase l1 bound to ubiquitin vinylmethylester.
S +31 3igyB Crystal structures of leishmania mexicana phosphoglycerate mutase at high cobalt concentrations
S +31 3igzB Crystal structures of leishmania mexicana phosphoglycerate mutase at low cobalt concentration
K +31 3ilkA The structure of a probable methylase family protein from haemophilus influenzae rd kw20
K -52 -31 -31 3irtA Crystal structure of the i93m mutant of ubiquitin carboxy-terminal hydrolase l1
K +31 3knuA Crystal structure of trna (guanine-n1)-methyltransferase from anaplasma phagocytophilum
K +31
1
3ktyA Crystal structure of probable methyltransferase from bordetella pertussis tohama i
K -52 -31 -31 3kvfA Crystal structure of the i93m mutant of ubiquitin carboxy terminal hydrolase l1 bound to ubiquitin vinylmethylester
K -52 -31 -31 3kw5A Crystal structure of ubiquitin carboxy terminal hydrolase l1 bound to ubiquitin vinylmethylester
K +31 3ky7A 2.35 angstrom resolution crystal structure of a putative trna (guanine-7-)-methyltransferase (trmd) from staphylococcus aureus subsp. aureus mrsa252
K +31 3kzcA Crystal structure of n-acetyl-l-ornithine transcarbamylase
K +31 3kzkA Crystal structure of acetylornithine transcarbamylase complexed with acetylcitrulline
K +31 3kznA Crystal structure of n-acetyl-l-ornithine transcarbamylase complexed with n-acetyl-l-ornirthine
K +31 3kzoA Crystal structure of n-acetyl-l-ornithine transcarbamylase complexed with carbamyl phosphate and n-acetyl-l-norvaline
K +31 3l02A Crystal structure of n-acetyl-l-ornithine transcarbamylase e92a mutant complexed with carbamyl phosphate and n-succinyl-l-norvaline
K +31 3l04A Crystal structure of n-acetyl-l-ornithine transcarbamylase e92p mutant complexed with carbamyl phosphate and n-succinyl-l-norvaline
K +31 3l05A Crystal structure of n-acetyl-l-ornithine transcarbamylase e92s mutant complexed with carbamyl phosphate and n-succinyl-l-norvaline
K +31 3l06A Crystal structure of n-acetyl-l-ornithine transcarbamylase e92v mutant complexed with carbamyl phosphate and n-succinyl-l-norvaline
K +31 3l8uA Crystal structure of smu.1707c, a putative rrna methyltransferase from streptococcus mutans ua159
K +31 3m4jA Crystal structure of n-acetyl-l-ornithine transcarbamylase complexed with palao
K +31 3m4nA Crystal structure of n-acetyl-l-ornithine transcarbamylase k302a mutant complexed with palao
K +31 3m5cA Crystal structure of n-acetyl-l-ornithine transcarbamylase k302e mutant complexed with palao
K +31 3m5dA Crystal structure of n-acetyl-l-ornithine transcarbamylase k302r mutant complexed with palao
S +31 3m7vA Crystal structure of phosphopentomutase from streptococcus mutans
S +31 3m8zA Phosphopentomutase from bacillus cereus bound with ribose-5-phosphate
S +31 3mk0A Refinement of placental alkaline phosphatase complexed with nitrophenyl
S +31 3mk1A Refinement of placental alkaline phosphatase complexed with nitrophenyl
S +31 3mk2A Placental alkaline phosphatase complexed with phe
S +31 3mvkA The crystal structure of fucu from bifidobacterium longum to 1.65a
K +31 3n4jA Putative rna methyltransferase from yersinia pestis
K +31 3n4kA Putative rna methyltransferase from yersinia pestis in complex with s-adenosyl-l-homocysteine.
K +31 3nk6A Structure of the nosiheptide-resistance methyltransferase
K +31 3nk7A Structure of the nosiheptide-resistance methyltransferase s-adenosyl-l-methionine complex
S +31 3nvlA Crystal structure of phosphoglycerate mutase from trypanosoma brucei
K +31 3onpA Crystal structure of trna/rrna methyltransferase spou from rhodobacter sphaeroides
S +31 3ot9A Phosphopentomutase from bacillus cereus bound to glucose-1,6-bisphosphate
S +31 3p13A Complex structure of d-ribose pyranase sa240 with d-ribose
K +31 3quvA Crystal structure of a trna-guanine-n1-methyltransferase from mycobacterium abscessus
K -52 -31 -31
2
3riiA Crystal structure of the catalytic domain of uchl5, a proteasome-associated human deubiquitinating enzyme, reveals an unproductive form of the enzyme
K -52 -31 -31
2
3risA Crystal structure of the catalytic domain of uchl5, a proteasome-associated human deubiquitinating enzyme, reveals an unproductive form of the enzyme
S +31 3szyA Crystal structure of phosphonoacetate hydrolase from sinorhizobium meliloti 1021 in apo form
S +31 3t02A Crystal structure of phosphonoacetate hydrolase from sinorhizobium meliloti 1021 in complex with phosphonoacetate
S +31 3un3A Phosphopentomutase t85q variant soaked with glucose 1,6-bisphosphate
S +31 3un5A Bacillus cereus phosphopentomutase t85e variant
S +31
1
3vtkA Thymidine kinase from herpes simplex virus type 1 in complex with adp and 5-iodo-deoxyuridine-monophosphate
S +31 4a34A Crystal structure of the fucose mutarotase in complex with l-fucose from streptococcus pneumoniae
K -52 -31 -31 4dm9A The crystal structure of ubiquitin carboxy-terminal hydrolase l1 (uchl1) bound to a tripeptide fluoromethyl ketone z-vae(ome)-fmk
S +31
1
4dz4A X-ray crystal structure of a hypothetical agmatinase from burkholderia thailandensis
K +31 4e8bA Crystal structure of 16s rrna methyltransferase rsme from e.coli
K +31 4fakA Crystal structure of orfx in complex with s-adenosylmethionine
S +31 4fdiA The molecular basis of mucopolysaccharidosis iv a
K +31 4h3zA Crystal structure of a symmetric dimer of a trna (guanine-(n(1)-)-methyltransferase from burkholderia phymatum bound to s-adenosyl homocystein in both half-sites
How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling