3IGYB

Crystal structures of leishmania mexicana phosphoglycerate mutase at high cobalt concentrations
Genus: 205
Slipknot S +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 15-463 449 1-14 498-549 464-497 14 52 slipknot
Chain Sequence
LLLKPHKDLPRRTVLIVVMDGLGIGPEDDYDAVHMASTPFMDAHRRDNRHFRCVRAHGTAVGLPTDADMGNSEVGHNALGAGRVALQGASLVDDAIKSGEIYTGEGYRYLHGAFSKEGSTLHLIGLLSDGGVHSRDNQIYSIIEHAVKDGAKRIRVHALYDGRDVPDGSSFRFTDELEAVLAKVRQNGCDAAIASGGGRMFVTMDRYDADWSIVERGWRAQVLGDARHFHSAKEAITTFREEDPKVTDQYYPPFIVVDEQDKPLGTIEDGDAVLCVNFRGDRVIEMTRAFEDEDFNKFDRVRVPKVRYAGMMRYDGDLGIPNNFLVPPPKLTRVSEEYLCGSGLNIFACSETQKFGHVTYFWNGNRSGKIDEKHETFKEVPSDRVQFNEKPRMQSAAITEAAIEALKSGMYNVVRINFPNGDMVGHTGDLKATITGVEAVDESLAKLKDAVDSVNGVYIVTADHGNSDDMAQRDKKGKPMKDGNGNVLPLTSHTLSPVPVFIGGAGLDPRVAMRTDLPAAGLANVTATFINLLGFEAPEDYEPSLIYVE
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1 16-467 452 1-15 494-549 468-493 15 56 slipknot
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3.1 16-493 478 1-15 497-549 494-496 15 53 slipknot
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2.1 12-496 485 1-11 501-549 497-500 11 49 slipknot
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2.1 13-496 484 1-11, 500-549 12-12, 497-499 11 50 slipknot
sequence length 549
structure length 549
publication title Crystal structures of Leishmania mexicana phosphoglycerate mutase suggest a one-metal mechanism and a new enzyme subclass
pubmed doi rcsb
molecule tags Isomerase
molecule keywords Cofactor-independent phosphoglycerate mutase
source organism Leishmania mexicana
total genus Genus: 205
ec nomenclature ec 5.4.2.1: Transferred entry: 5.4.2.11 and 5.4.2.12.
pdb deposition date 2009-07-29
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF01676 Metalloenzyme Metalloenzyme superfamily
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3igyB01
3.40.1450.10 Alpha Beta 3-Layer(aba) Sandwich 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 3igyB02
1ZEDA 1EW8A 3MK2A 1ANIA 1E2SP 3T02A 3MK1A 1ALIA 1ZEBA 1ED9A 1E1ZP 4FDJA 1N2LA 3IGZB 1KH5A 3M8ZA 3M8WA 3ED4A 3UNYA 3BDHA 1AJDA 1B8JA 3BDFA 3UN5A 1ZEFA 1HJKA 3T00A 3DPCA 1EI6A 1ELXA 2G9YA 1URAA 3SZYA 1AUKA 1KHNA 1EQJA 4FDIA 1HDHA 1KH4A 1KH7A 1SHQA 3CMRA 1ELYA 1AJBA 2QZUA 1AJCA 1E3CP 1ELZA 1O99A 1URBA 3DYCA 3M8YA 1Y7AA 1K7HA 1ANJA 1KHKA 1SHNA 2ANHA 3TX0A 1ED8A 1EW9A 3BDGB 3NVLA 1ALJA 1AJAA 1HQAA 1KHJA 1ALKA 1N2KA 3UO0A 2IFYA 1O98A 1FSUA 3BDGA 2GA3A 3TWZA 3SZZA 1EJJA 3UN2A 3UN3A 2GLQA 3MK0A 3OT9A 1KH9A 1Y6VA 3IGYB 1KHLA 3M7VA 1EW2A 3T01A 1P49A 1E33P
chains in the KnotProt database with same CATH superfamily
1ZEDA 1EW8A 3MK2A 1ANIA 1E2SP 3T02A 3MK1A 1ALIA 1ZEBA 1ED9A 1E1ZP 4FDJA 1N2LA 3IGZB 1KH5A 3M8ZA 3M8WA 3ED4A 3UNYA 3BDHA 1AJDA 1B8JA 3BDFA 3UN5A 1ZEFA 1HJKA 3T00A 3DPCA 1EI6A 1ELXA 2G9YA 1URAA 3SZYA 1AUKA 1KHNA 1EQJA 4FDIA 1HDHA 1KH4A 1KH7A 1SHQA 3CMRA 1ELYA 1AJBA 2QZUA 1AJCA 1E3CP 1ELZA 1O99A 1URBA 3DYCA 3M8YA 1Y7AA 1K7HA 1ANJA 1KHKA 1SHNA 2ANHA 3TX0A 1ED8A 1EW9A 3BDGB 3NVLA 1ALJA 1AJAA 1HQAA 1KHJA 1ALKA 1N2KA 3UO0A 2IFYA 1O98A 1FSUA 3BDGA 2GA3A 3TWZA 3SZZA 1EJJA 3UN2A 3UN3A 2GLQA 3MK0A 3OT9A 1KH9A 1Y6VA 3IGYB 1KHLA 3M7VA 1EW2A 3T01A 1P49A 1E33P
chains in the KnotProt database with same CATH topology
1ZEDA 1EW8A 3MK2A 1ANIA 1E2SP 3T02A 3MK1A 1ALIA 1ZEBA 1ED9A 1E1ZP 4FDJA 1N2LA 3IGZB 1KH5A 3M8ZA 3M8WA 3ED4A 3UNYA 3BDHA 1AJDA 1B8JA 3BDFA 3UN5A 1ZEFA 1HJKA 3T00A 3DPCA 1EI6A 1ELXA 2G9YA 1URAA 3SZYA 1AUKA 1KHNA 1EQJA 4FDIA 1HDHA 1KH4A 1KH7A 1SHQA 3CMRA 1ELYA 1AJBA 2QZUA 1AJCA 1E3CP 1ELZA 1O99A 1URBA 3DYCA 3M8YA 1Y7AA 1K7HA 1ANJA 1KHKA 1SHNA 2ANHA 3TX0A 1ED8A 1EW9A 3BDGB 3NVLA 1ALJA 1AJAA 1HQAA 1KHJA 1ALKA 1N2KA 3UO0A 2IFYA 1O98A 1FSUA 3BDGA 2GA3A 3TWZA 3SZZA 1EJJA 3UN2A 3UN3A 2GLQA 3MK0A 3OT9A 1KH9A 1Y6VA 3IGYB 1KHLA 3M7VA 1EW2A 3T01A 1P49A 1E33P
chains in the KnotProt database with same CATH homology

  
#chains in the KnotProt database with same CATH superfamily
 1ZED A;  1EW8 A;  3MK2 A;  1ANI A;  1E2S P;  3T02 A;  3MK1 A;  1ALI A;  1ZEB A;  1ED9 A;  1E1Z P;  4FDJ A;  1N2L A;  3IGZ B;  1KH5 A;  3M8Z A;  3M8W A;  3ED4 A;  3UNY A;  3BDH A;  1AJD A;  1B8J A;  3BDF A;  3UN5 A;  1ZEF A;  1HJK A;  3T00 A;  3DPC A;  1EI6 A;  1ELX A;  2G9Y A;  1URA A;  3SZY A;  1AUK A;  1KHN A;  1EQJ A;  4FDI A;  1HDH A;  1KH4 A;  1KH7 A;  1SHQ A;  3CMR A;  1ELY A;  1AJB A;  2QZU A;  1AJC A;  1E3C P;  1ELZ A;  1O99 A;  1URB A;  3DYC A;  3M8Y A;  1Y7A A;  1K7H A;  1ANJ A;  1KHK A;  1SHN A;  2ANH A;  3TX0 A;  1ED8 A;  1EW9 A;  3BDG B;  3NVL A;  1ALJ A;  1AJA A;  1HQA A;  1KHJ A;  1ALK A;  1N2K A;  3UO0 A;  2IFY A;  1O98 A;  1FSU A;  3BDG A;  2GA3 A;  3TWZ A;  3SZZ A;  1EJJ A;  3UN2 A;  3UN3 A;  2GLQ A;  3MK0 A;  3OT9 A;  1KH9 A;  1Y6V A;  3IGY B;  1KHL A;  3M7V A;  1EW2 A;  3T01 A;  1P49 A;  1E33 P; 
#chains in the KnotProt database with same CATH topology
 1ZED A;  1EW8 A;  3MK2 A;  1ANI A;  1E2S P;  3T02 A;  3MK1 A;  1ALI A;  1ZEB A;  1ED9 A;  1E1Z P;  4FDJ A;  1N2L A;  3IGZ B;  1KH5 A;  3M8Z A;  3M8W A;  3ED4 A;  3UNY A;  3BDH A;  1AJD A;  1B8J A;  3BDF A;  3UN5 A;  1ZEF A;  1HJK A;  3T00 A;  3DPC A;  1EI6 A;  1ELX A;  2G9Y A;  1URA A;  3SZY A;  1AUK A;  1KHN A;  1EQJ A;  4FDI A;  1HDH A;  1KH4 A;  1KH7 A;  1SHQ A;  3CMR A;  1ELY A;  1AJB A;  2QZU A;  1AJC A;  1E3C P;  1ELZ A;  1O99 A;  1URB A;  3DYC A;  3M8Y A;  1Y7A A;  1K7H A;  1ANJ A;  1KHK A;  1SHN A;  2ANH A;  3TX0 A;  1ED8 A;  1EW9 A;  3BDG B;  3NVL A;  1ALJ A;  1AJA A;  1HQA A;  1KHJ A;  1ALK A;  1N2K A;  3UO0 A;  2IFY A;  1O98 A;  1FSU A;  3BDG A;  2GA3 A;  3TWZ A;  3SZZ A;  1EJJ A;  3UN2 A;  3UN3 A;  2GLQ A;  3MK0 A;  3OT9 A;  1KH9 A;  1Y6V A;  3IGY B;  1KHL A;  3M7V A;  1EW2 A;  3T01 A;  1P49 A;  1E33 P; 
#chains in the KnotProt database with same CATH homology
 1ZED A;  1EW8 A;  3MK2 A;  1ANI A;  1E2S P;  3T02 A;  3MK1 A;  1ALI A;  1ZEB A;  1ED9 A;  1E1Z P;  4FDJ A;  1N2L A;  3IGZ B;  1KH5 A;  3M8Z A;  3M8W A;  3ED4 A;  3UNY A;  3BDH A;  1AJD A;  1B8J A;  3BDF A;  3UN5 A;  1ZEF A;  1HJK A;  3T00 A;  3DPC A;  1EI6 A;  1ELX A;  2G9Y A;  1URA A;  3SZY A;  1AUK A;  1KHN A;  1EQJ A;  4FDI A;  1HDH A;  1KH4 A;  1KH7 A;  1SHQ A;  3CMR A;  1ELY A;  1AJB A;  2QZU A;  1AJC A;  1E3C P;  1ELZ A;  1O99 A;  1URB A;  3DYC A;  3M8Y A;  1Y7A A;  1K7H A;  1ANJ A;  1KHK A;  1SHN A;  2ANH A;  3TX0 A;  1ED8 A;  1EW9 A;  3BDG B;  3NVL A;  1ALJ A;  1AJA A;  1HQA A;  1KHJ A;  1ALK A;  1N2K A;  3UO0 A;  2IFY A;  1O98 A;  1FSU A;  3BDG A;  2GA3 A;  3TWZ A;  3SZZ A;  1EJJ A;  3UN2 A;  3UN3 A;  2GLQ A;  3MK0 A;  3OT9 A;  1KH9 A;  1Y6V A;  3IGY B;  1KHL A;  3M7V A;  1EW2 A;  3T01 A;  1P49 A;  1E33 P;
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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