2Z0YA

Crystal structure of ttha0657-sam complex
Genus: 59
Knot K +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 152-197 46 1-151, 198-224 151 27 knot
Chain Sequence
RAFSPGLTGVLPLRETRHLVEVLRARVGDRFTVFDGEREALAEVVDLGPPLRYRVLEERRPEREVGVEVVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLRRLRAVALEAAKQSGRVVVPEVLPPIPLKAVPQVAQGLVAHVGATARVREVLDPEKPLALAVGPEGGFAEEEVALLEARGFTPVSLGRRILRAETAALALLALCTAGEGR
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1 152-198 47 1-151, 199-224 151 26 knot
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2.1 148-195 48 1-147 201-224 196-200 147 24 slipknot
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3.1 155-200 46 201-224 1-151 152-154 151 23 slipknot
sequence length 224
structure length 224
publication title Crystal structure of TTHA0657-SAM complex
rcsb
molecule tags Transferase
molecule keywords Putative uncharacterized protein TTHA0657
source organism Thermus thermophilus
total genus Genus: 59
ec nomenclature
pdb deposition date 2007-05-07
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04452 Methyltrans_RNA RNA methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.20 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Hypothetical PUA domain-like; domain 1 2z0yA01
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 2z0yA02
4CNEB 3AIAA 3N4JA 1V2XA 1TO0A 3ONPA 1UAJA 1VHYA 3N4KA 1V6ZA 3GYQA 4CNGB 2O3AA 3IEFA 1UAKA 1MXIA 3ILKA 3L8UA 2I6DA 1O6DA 1NXZA 1X7OA 3DCMX 2QMMA 2CX8A 4H3YA 3KY7A 4IG6A 1VHKA 1UALA 3NK7A 2Z0YA 1J85A 2YY8A 1K3RA 1VH0A 4FAKA 1UAMA 3QUVA 1NS5A 1X7PA 3AI9X 3NK6A 4CNFB 4E8BA 3IC6A 3KW2A 1ZJRA 3E5YA 1GZ0A 3KTYA 3KNUA 3AXZA 2QWVA 1P9PA 4H3ZA 2HA8A
chains in the KnotProt database with same CATH superfamily
4CNEB 3AIAA 3N4JA 1V2XA 1TO0A 3ONPA 1UAJA 1VHYA 3N4KA 1V6ZA 3GYQA 4CNGB 2O3AA 3IEFA 1UAKA 1MXIA 3ILKA 3L8UA 2I6DA 1O6DA 1NXZA 1X7OA 3DCMX 2QMMA 2CX8A 4H3YA 3KY7A 4IG6A 1VHKA 1UALA 3NK7A 2Z0YA 1J85A 2YY8A 1K3RA 1VH0A 4FAKA 1UAMA 3QUVA 1NS5A 1X7PA 3AI9X 3NK6A 4CNFB 4E8BA 3IC6A 3KW2A 1ZJRA 3E5YA 1GZ0A 3KTYA 3KNUA 3AXZA 2QWVA 1P9PA 4H3ZA 2HA8A
chains in the KnotProt database with same CATH topology
4CNEB 3AIAA 3N4JA 1V2XA 1TO0A 3ONPA 1UAJA 1VHYA 3N4KA 1V6ZA 3GYQA 4CNGB 2O3AA 3IEFA 1UAKA 1MXIA 3ILKA 3L8UA 2I6DA 1O6DA 1NXZA 1X7OA 3DCMX 2QMMA 2CX8A 4H3YA 3KY7A 4IG6A 1VHKA 1UALA 3NK7A 2Z0YA 1J85A 2YY8A 1K3RA 1VH0A 4FAKA 1UAMA 3QUVA 1NS5A 1X7PA 3AI9X 3NK6A 4CNFB 4E8BA 3IC6A 3KW2A 1ZJRA 3E5YA 1GZ0A 3KTYA 3KNUA 3AXZA 2QWVA 1P9PA 4H3ZA 2HA8A
chains in the KnotProt database with same CATH homology

  
#chains in the KnotProt database with same CATH superfamily
 4CNE B;  3AIA A;  3N4J A;  1V2X A;  1TO0 A;  3ONP A;  1UAJ A;  1VHY A;  3N4K A;  1V6Z A;  3GYQ A;  4CNG B;  2O3A A;  3IEF A;  1UAK A;  1MXI A;  3ILK A;  3L8U A;  2I6D A;  1O6D A;  1NXZ A;  1X7O A;  3DCM X;  2QMM A;  2CX8 A;  4H3Y A;  3KY7 A;  4IG6 A;  1VHK A;  1UAL A;  3NK7 A;  2Z0Y A;  1J85 A;  2YY8 A;  1K3R A;  1VH0 A;  4FAK A;  1UAM A;  3QUV A;  1NS5 A;  1X7P A;  3AI9 X;  3NK6 A;  4CNF B;  4E8B A;  3IC6 A;  3KW2 A;  1ZJR A;  3E5Y A;  1GZ0 A;  3KTY A;  3KNU A;  3AXZ A;  2QWV A;  1P9P A;  4H3Z A;  2HA8 A; 
#chains in the KnotProt database with same CATH topology
 4CNE B;  3AIA A;  3N4J A;  1V2X A;  1TO0 A;  3ONP A;  1UAJ A;  1VHY A;  3N4K A;  1V6Z A;  3GYQ A;  4CNG B;  2O3A A;  3IEF A;  1UAK A;  1MXI A;  3ILK A;  3L8U A;  2I6D A;  1O6D A;  1NXZ A;  1X7O A;  3DCM X;  2QMM A;  2CX8 A;  4H3Y A;  3KY7 A;  4IG6 A;  1VHK A;  1UAL A;  3NK7 A;  2Z0Y A;  1J85 A;  2YY8 A;  1K3R A;  1VH0 A;  4FAK A;  1UAM A;  3QUV A;  1NS5 A;  1X7P A;  3AI9 X;  3NK6 A;  4CNF B;  4E8B A;  3IC6 A;  3KW2 A;  1ZJR A;  3E5Y A;  1GZ0 A;  3KTY A;  3KNU A;  3AXZ A;  2QWV A;  1P9P A;  4H3Z A;  2HA8 A; 
#chains in the KnotProt database with same CATH homology
 4CNE B;  3AIA A;  3N4J A;  1V2X A;  1TO0 A;  3ONP A;  1UAJ A;  1VHY A;  3N4K A;  1V6Z A;  3GYQ A;  4CNG B;  2O3A A;  3IEF A;  1UAK A;  1MXI A;  3ILK A;  3L8U A;  2I6D A;  1O6D A;  1NXZ A;  1X7O A;  3DCM X;  2QMM A;  2CX8 A;  4H3Y A;  3KY7 A;  4IG6 A;  1VHK A;  1UAL A;  3NK7 A;  2Z0Y A;  1J85 A;  2YY8 A;  1K3R A;  1VH0 A;  4FAK A;  1UAM A;  3QUV A;  1NS5 A;  1X7P A;  3AI9 X;  3NK6 A;  4CNF B;  4E8B A;  3IC6 A;  3KW2 A;  1ZJR A;  3E5Y A;  1GZ0 A;  3KTY A;  3KNU A;  3AXZ A;  2QWV A;  1P9P A;  4H3Z A;  2HA8 A;
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling