3ED4A

Crystal structure of putative arylsulfatase from escherichia coli
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 6-278 273 1-5 315-468 279-314 5 154 slipknot
Chain Sequence
QPNLVIIMADDLGYGDLATYGHQIVKTPNIDRLAQEGVKFTDYYAPAPLSSPSRAGLLTGRMPFRTGIRSWIPSGKDVALGRNELTIANLLKAQGYDTAMMGKLHLNAGGDRTDQPQAQDMGFDYSLANTAGFVTDATLDNAKERPRYGMVYPTGWLRNGQPTPRADKMSGEYVSSEVVNWLDNKKDSKPFFLYVAFTEVHSPLASPKKYLDMYSQYMSAYQKQHPDLFYGDWADKPWRGVGEYYANISYLDAQVGKVLDKIKAMGEEDNTIVIFTSDNGPVTREARKVYELNLAGETDGLRGRKDNLWEGGIRVPAIIKYGKHLPQGMVSDTPVYGLDWMPTLAKMMNFKLPTDRTFDGESLVPVLEQKALKREKPLIFGIDMPFQDDPTDEWAIRDGDWKMIIDRNNKPKYLYNLKSDRYETLNLIGKKPDIEKQMYGKFLKYKTDIDNDSLMKARGDKPEAVTWG
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 6-292 287 1-5 308-468 293-307 5 161 slipknot
view details
2.1 9-304 296 1-2, 312-468 3-8, 305-311 2 157 slipknot
view details
2.1 9-311 303 1-2, 314-468 3-8, 312-313 2 155 slipknot
view details
2.1 9-285 277 1-3, 296-468 4-8, 286-295 3 173 slipknot
sequence length 468
structure length 468
publication title Crystal Structure of Arylsulfatase from Escherichia Coli
rcsb
molecule tags Transferase
molecule keywords ARYLSULFATASE
source organism Escherichia coli
total genus Genus: 164
ec nomenclature
pdb deposition date 2008-09-02
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1120.10 Alpha Beta 2-Layer Sandwich Arylsulfatase, C-terminal domain Arylsulfatase, C-terminal domain 3ed4A02
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3ed4A01
1KH7A 2GLQA 3DYCA 3IGYB 3T01A 1KHNA 3T00A 1SHQA 3M8WA 1AJDA 1AJBA 1KH4A 1Y7AA 1AUKA 1ALKA 3M7VA 1B8JA 1ZEBA 3BDGB 3T02A 1EW8A 1Y6VA 3UN2A 1ELYA 1E3CP 3UN5A 1URBA 3TWZA 1E1ZP 1O98A 1HJKA 1ALIA 1E2SP 1EQJA 2G9YA 1KHJA 1O99A 3IGZB 3MK2A 1KHLA 1N2KA 1P49A 1ANIA 3SZYA 3M8YA 2QZUA 1ELZA 1EJJA 3OT9A 3UO0A 1K7HA 2GA3A 1N2LA 3UNYA 1AJCA 1ZEFA 2IFYA 3MK0A 1KH9A 3BDGA 1HDHA 1EW2A 3DPCA 1ALJA 1ED8A 1EI6A 2ANHA 3UN3A 3BDFA 3ED4A 1E33P 1EW9A 1KHKA 3SZZA 3NVLA 1ZEDA 1AJAA 1KH5A 1FSUA 3CMRA 3MK1A 3TX0A 1URAA 1ELXA 3M8ZA 1ANJA 1HQAA 1ED9A 4FDJA 3BDHA 4FDIA 1SHNA
chains in the KnotProt database with same CATH superfamily
1KH7A 2GLQA 3DYCA 3IGYB 3T01A 1KHNA 3T00A 1SHQA 3M8WA 1AJDA 1AJBA 1KH4A 1Y7AA 1AUKA 1ALKA 3M7VA 1B8JA 1ZEBA 3BDGB 3T02A 1EW8A 1Y6VA 3UN2A 1ELYA 1E3CP 3UN5A 1URBA 3TWZA 1E1ZP 1O98A 1HJKA 1ALIA 1E2SP 1EQJA 2G9YA 1KHJA 1O99A 3IGZB 3MK2A 1KHLA 1N2KA 1P49A 1ANIA 3SZYA 3M8YA 2QZUA 1ELZA 1EJJA 3OT9A 3UO0A 1K7HA 2GA3A 1N2LA 3UNYA 1AJCA 1ZEFA 2IFYA 3MK0A 1KH9A 3BDGA 1HDHA 1EW2A 3DPCA 1ALJA 1ED8A 1EI6A 2ANHA 3UN3A 3BDFA 3ED4A 1E33P 1EW9A 1KHKA 3SZZA 3NVLA 1ZEDA 1AJAA 1KH5A 1FSUA 3CMRA 3MK1A 3TX0A 1URAA 1ELXA 3M8ZA 1ANJA 1HQAA 1ED9A 4FDJA 3BDHA 4FDIA 1SHNA
chains in the KnotProt database with same CATH topology
1KH7A 2GLQA 3DYCA 3IGYB 3T01A 1KHNA 3T00A 1SHQA 3M8WA 1AJDA 1AJBA 1KH4A 1Y7AA 1AUKA 1ALKA 3M7VA 1B8JA 1ZEBA 3BDGB 3T02A 1EW8A 1Y6VA 3UN2A 1ELYA 1E3CP 3UN5A 1URBA 3TWZA 1E1ZP 1O98A 1HJKA 1ALIA 1E2SP 1EQJA 2G9YA 1KHJA 1O99A 3IGZB 3MK2A 1KHLA 1N2KA 1P49A 1ANIA 3SZYA 3M8YA 2QZUA 1ELZA 1EJJA 3OT9A 3UO0A 1K7HA 2GA3A 1N2LA 3UNYA 1AJCA 1ZEFA 2IFYA 3MK0A 1KH9A 3BDGA 1HDHA 1EW2A 3DPCA 1ALJA 1ED8A 1EI6A 2ANHA 3UN3A 3BDFA 3ED4A 1E33P 1EW9A 1KHKA 3SZZA 3NVLA 1ZEDA 1AJAA 1KH5A 1FSUA 3CMRA 3MK1A 3TX0A 1URAA 1ELXA 3M8ZA 1ANJA 1HQAA 1ED9A 4FDJA 3BDHA 4FDIA 1SHNA
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 1KH7 A;  2GLQ A;  3DYC A;  3IGY B;  3T01 A;  1KHN A;  3T00 A;  1SHQ A;  3M8W A;  1AJD A;  1AJB A;  1KH4 A;  1Y7A A;  1AUK A;  1ALK A;  3M7V A;  1B8J A;  1ZEB A;  3BDG B;  3T02 A;  1EW8 A;  1Y6V A;  3UN2 A;  1ELY A;  1E3C P;  3UN5 A;  1URB A;  3TWZ A;  1E1Z P;  1O98 A;  1HJK A;  1ALI A;  1E2S P;  1EQJ A;  2G9Y A;  1KHJ A;  1O99 A;  3IGZ B;  3MK2 A;  1KHL A;  1N2K A;  1P49 A;  1ANI A;  3SZY A;  3M8Y A;  2QZU A;  1ELZ A;  1EJJ A;  3OT9 A;  3UO0 A;  1K7H A;  2GA3 A;  1N2L A;  3UNY A;  1AJC A;  1ZEF A;  2IFY A;  3MK0 A;  1KH9 A;  3BDG A;  1HDH A;  1EW2 A;  3DPC A;  1ALJ A;  1ED8 A;  1EI6 A;  2ANH A;  3UN3 A;  3BDF A;  3ED4 A;  1E33 P;  1EW9 A;  1KHK A;  3SZZ A;  3NVL A;  1ZED A;  1AJA A;  1KH5 A;  1FSU A;  3CMR A;  3MK1 A;  3TX0 A;  1URA A;  1ELX A;  3M8Z A;  1ANJ A;  1HQA A;  1ED9 A;  4FDJ A;  3BDH A;  4FDI A;  1SHN A; 
#chains in the KnotProt database with same CATH topology
 1KH7 A;  2GLQ A;  3DYC A;  3IGY B;  3T01 A;  1KHN A;  3T00 A;  1SHQ A;  3M8W A;  1AJD A;  1AJB A;  1KH4 A;  1Y7A A;  1AUK A;  1ALK A;  3M7V A;  1B8J A;  1ZEB A;  3BDG B;  3T02 A;  1EW8 A;  1Y6V A;  3UN2 A;  1ELY A;  1E3C P;  3UN5 A;  1URB A;  3TWZ A;  1E1Z P;  1O98 A;  1HJK A;  1ALI A;  1E2S P;  1EQJ A;  2G9Y A;  1KHJ A;  1O99 A;  3IGZ B;  3MK2 A;  1KHL A;  1N2K A;  1P49 A;  1ANI A;  3SZY A;  3M8Y A;  2QZU A;  1ELZ A;  1EJJ A;  3OT9 A;  3UO0 A;  1K7H A;  2GA3 A;  1N2L A;  3UNY A;  1AJC A;  1ZEF A;  2IFY A;  3MK0 A;  1KH9 A;  3BDG A;  1HDH A;  1EW2 A;  3DPC A;  1ALJ A;  1ED8 A;  1EI6 A;  2ANH A;  3UN3 A;  3BDF A;  3ED4 A;  1E33 P;  1EW9 A;  1KHK A;  3SZZ A;  3NVL A;  1ZED A;  1AJA A;  1KH5 A;  1FSU A;  3CMR A;  3MK1 A;  3TX0 A;  1URA A;  1ELX A;  3M8Z A;  1ANJ A;  1HQA A;  1ED9 A;  4FDJ A;  3BDH A;  4FDI A;  1SHN A; 
#chains in the KnotProt database with same CATH homology
 1KH7 A;  2GLQ A;  3DYC A;  3IGY B;  3T01 A;  1KHN A;  3T00 A;  1SHQ A;  3M8W A;  1AJD A;  1AJB A;  1KH4 A;  1Y7A A;  1AUK A;  1ALK A;  3M7V A;  1B8J A;  1ZEB A;  3BDG B;  3T02 A;  1EW8 A;  1Y6V A;  3UN2 A;  1ELY A;  1E3C P;  3UN5 A;  1URB A;  3TWZ A;  1E1Z P;  1O98 A;  1HJK A;  1ALI A;  1E2S P;  1EQJ A;  2G9Y A;  1KHJ A;  1O99 A;  3IGZ B;  3MK2 A;  1KHL A;  1N2K A;  1P49 A;  1ANI A;  3SZY A;  3M8Y A;  2QZU A;  1ELZ A;  1EJJ A;  3OT9 A;  3UO0 A;  1K7H A;  2GA3 A;  1N2L A;  3UNY A;  1AJC A;  1ZEF A;  2IFY A;  3MK0 A;  1KH9 A;  3BDG A;  1HDH A;  1EW2 A;  3DPC A;  1ALJ A;  1ED8 A;  1EI6 A;  2ANH A;  3UN3 A;  3BDF A;  3ED4 A;  1E33 P;  1EW9 A;  1KHK A;  3SZZ A;  3NVL A;  1ZED A;  1AJA A;  1KH5 A;  1FSU A;  3CMR A;  3MK1 A;  3TX0 A;  1URA A;  1ELX A;  3M8Z A;  1ANJ A;  1HQA A;  1ED9 A;  4FDJ A;  3BDH A;  4FDI A;  1SHN A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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