3IGZB

Crystal structures of leishmania mexicana phosphoglycerate mutase at low cobalt concentration
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 15-465 451 1-14 498-549 466-497 14 52 slipknot
Chain Sequence
LLLKPHKDLPRRTVLIVVMDGLGIGPEDDYDAVHMASTPFMDAHRRDNRHFRCVRAHGTAVGLPTDADMGNSEVGHNALGAGRVALQGASLVDDAIKSGEIYTGEGYRYLHGAFSKEGSTLHLIGLLSDGGVHSRDNQIYSIIEHAVKDGAKRIRVHALYDGRDVPDGSSFRFTDELEAVLAKVRQNGCDAAIASGGGRMFVTMDRYDADWSIVERGWRAQVLGDARHFHSAKEAITTFREEDPKVTDQYYPPFIVVDEQDKPLGTIEDGDAVLCVNFRGDRVIEMTRAFEDEDFNKFDRVRVPKVRYAGMMRYDGDLGIPNNFLVPPPKLTRVSEEYLCGSGLNIFACSETQKFGHVTYFWNGNRSGKIDEKHETFKEVPSDRVQFNEKPRMQSAAITEAAIEALKSGMYNVVRINFPNGDMVGHTGDLKATITGVEAVDESLAKLKDAVDSVNGVYIVTADHGNSDDMAQRDKKGKPMKDGNGNVLPLTSHTLSPVPVFIGGAGLDPRVAMRTDLPAAGLANVTATFINLLGFEAPEDYEPSLIYVE
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 7-463 457 1-6 468-549 464-467 6 82 slipknot
view details
3.1 17-468 452 1-16 493-549 469-492 16 57 slipknot
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3.1 5-492 488 1-4 495-549 493-494 4 55 slipknot
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2.1 14-494 481 1-13 500-549 495-499 13 50 slipknot
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3.1 9-492 484 1-4, 495-549 5-8, 493-494 4 55 slipknot
sequence length 549
structure length 549
publication title Crystal structures of Leishmania mexicana phosphoglycerate mutase suggest a one-metal mechanism and a new enzyme subclass
pubmed doi rcsb
molecule tags Isomerase
molecule keywords Cofactor-independent phosphoglycerate mutase
source organism Leishmania mexicana
total genus Genus: 207
ec nomenclature ec 5.4.2.1: Transferred entry: 5.4.2.11 and 5.4.2.12.
pdb deposition date 2009-07-29
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF01676 Metalloenzyme Metalloenzyme superfamily
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3igzB01
3.40.1450.10 Alpha Beta 3-Layer(aba) Sandwich 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 3igzB02
1KHLA 3BDGA 3MK1A 1ED9A 1ELXA 1P49A 3TX0A 3T00A 1ANJA 3NVLA 1EI6A 1AJBA 3UNYA 1EJJA 3MK0A 1URAA 3UN3A 4FDJA 3UN2A 1AJDA 1ZEFA 1B8JA 1SHQA 3IGZB 3BDHA 2GA3A 3MK2A 1URBA 1KH5A 1ANIA 1HQAA 1SHNA 3CMRA 1N2LA 1KHKA 3BDGB 1E1ZP 1O99A 3T01A 3M8YA 3UN5A 2GLQA 1KH7A 1K7HA 1ELZA 4FDIA 1EQJA 1ELYA 3DYCA 1EW8A 3ED4A 1KHJA 3TWZA 1N2KA 3SZYA 1E3CP 1ZEBA 1EW9A 1HJKA 3M7VA 2IFYA 3M8WA 1ALJA 1AUKA 1Y6VA 1E2SP 3BDFA 3IGYB 1AJAA 1O98A 3T02A 1ED8A 2G9YA 1HDHA 1ALKA 3UO0A 2ANHA 1EW2A 1Y7AA 1FSUA 1ZEDA 1ALIA 3OT9A 2QZUA 1AJCA 1KH4A 3SZZA 1E33P 3DPCA 1KHNA 1KH9A 3M8ZA
chains in the KnotProt database with same CATH superfamily
1KHLA 3BDGA 3MK1A 1ED9A 1ELXA 1P49A 3TX0A 3T00A 1ANJA 3NVLA 1EI6A 1AJBA 3UNYA 1EJJA 3MK0A 1URAA 3UN3A 4FDJA 3UN2A 1AJDA 1ZEFA 1B8JA 1SHQA 3IGZB 3BDHA 2GA3A 3MK2A 1URBA 1KH5A 1ANIA 1HQAA 1SHNA 3CMRA 1N2LA 1KHKA 3BDGB 1E1ZP 1O99A 3T01A 3M8YA 3UN5A 2GLQA 1KH7A 1K7HA 1ELZA 4FDIA 1EQJA 1ELYA 3DYCA 1EW8A 3ED4A 1KHJA 3TWZA 1N2KA 3SZYA 1E3CP 1ZEBA 1EW9A 1HJKA 3M7VA 2IFYA 3M8WA 1ALJA 1AUKA 1Y6VA 1E2SP 3BDFA 3IGYB 1AJAA 1O98A 3T02A 1ED8A 2G9YA 1HDHA 1ALKA 3UO0A 2ANHA 1EW2A 1Y7AA 1FSUA 1ZEDA 1ALIA 3OT9A 2QZUA 1AJCA 1KH4A 3SZZA 1E33P 3DPCA 1KHNA 1KH9A 3M8ZA
chains in the KnotProt database with same CATH topology
1KHLA 3BDGA 3MK1A 1ED9A 1ELXA 1P49A 3TX0A 3T00A 1ANJA 3NVLA 1EI6A 1AJBA 3UNYA 1EJJA 3MK0A 1URAA 3UN3A 4FDJA 3UN2A 1AJDA 1ZEFA 1B8JA 1SHQA 3IGZB 3BDHA 2GA3A 3MK2A 1URBA 1KH5A 1ANIA 1HQAA 1SHNA 3CMRA 1N2LA 1KHKA 3BDGB 1E1ZP 1O99A 3T01A 3M8YA 3UN5A 2GLQA 1KH7A 1K7HA 1ELZA 4FDIA 1EQJA 1ELYA 3DYCA 1EW8A 3ED4A 1KHJA 3TWZA 1N2KA 3SZYA 1E3CP 1ZEBA 1EW9A 1HJKA 3M7VA 2IFYA 3M8WA 1ALJA 1AUKA 1Y6VA 1E2SP 3BDFA 3IGYB 1AJAA 1O98A 3T02A 1ED8A 2G9YA 1HDHA 1ALKA 3UO0A 2ANHA 1EW2A 1Y7AA 1FSUA 1ZEDA 1ALIA 3OT9A 2QZUA 1AJCA 1KH4A 3SZZA 1E33P 3DPCA 1KHNA 1KH9A 3M8ZA
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 1KHL A;  3BDG A;  3MK1 A;  1ED9 A;  1ELX A;  1P49 A;  3TX0 A;  3T00 A;  1ANJ A;  3NVL A;  1EI6 A;  1AJB A;  3UNY A;  1EJJ A;  3MK0 A;  1URA A;  3UN3 A;  4FDJ A;  3UN2 A;  1AJD A;  1ZEF A;  1B8J A;  1SHQ A;  3IGZ B;  3BDH A;  2GA3 A;  3MK2 A;  1URB A;  1KH5 A;  1ANI A;  1HQA A;  1SHN A;  3CMR A;  1N2L A;  1KHK A;  3BDG B;  1E1Z P;  1O99 A;  3T01 A;  3M8Y A;  3UN5 A;  2GLQ A;  1KH7 A;  1K7H A;  1ELZ A;  4FDI A;  1EQJ A;  1ELY A;  3DYC A;  1EW8 A;  3ED4 A;  1KHJ A;  3TWZ A;  1N2K A;  3SZY A;  1E3C P;  1ZEB A;  1EW9 A;  1HJK A;  3M7V A;  2IFY A;  3M8W A;  1ALJ A;  1AUK A;  1Y6V A;  1E2S P;  3BDF A;  3IGY B;  1AJA A;  1O98 A;  3T02 A;  1ED8 A;  2G9Y A;  1HDH A;  1ALK A;  3UO0 A;  2ANH A;  1EW2 A;  1Y7A A;  1FSU A;  1ZED A;  1ALI A;  3OT9 A;  2QZU A;  1AJC A;  1KH4 A;  3SZZ A;  1E33 P;  3DPC A;  1KHN A;  1KH9 A;  3M8Z A; 
#chains in the KnotProt database with same CATH topology
 1KHL A;  3BDG A;  3MK1 A;  1ED9 A;  1ELX A;  1P49 A;  3TX0 A;  3T00 A;  1ANJ A;  3NVL A;  1EI6 A;  1AJB A;  3UNY A;  1EJJ A;  3MK0 A;  1URA A;  3UN3 A;  4FDJ A;  3UN2 A;  1AJD A;  1ZEF A;  1B8J A;  1SHQ A;  3IGZ B;  3BDH A;  2GA3 A;  3MK2 A;  1URB A;  1KH5 A;  1ANI A;  1HQA A;  1SHN A;  3CMR A;  1N2L A;  1KHK A;  3BDG B;  1E1Z P;  1O99 A;  3T01 A;  3M8Y A;  3UN5 A;  2GLQ A;  1KH7 A;  1K7H A;  1ELZ A;  4FDI A;  1EQJ A;  1ELY A;  3DYC A;  1EW8 A;  3ED4 A;  1KHJ A;  3TWZ A;  1N2K A;  3SZY A;  1E3C P;  1ZEB A;  1EW9 A;  1HJK A;  3M7V A;  2IFY A;  3M8W A;  1ALJ A;  1AUK A;  1Y6V A;  1E2S P;  3BDF A;  3IGY B;  1AJA A;  1O98 A;  3T02 A;  1ED8 A;  2G9Y A;  1HDH A;  1ALK A;  3UO0 A;  2ANH A;  1EW2 A;  1Y7A A;  1FSU A;  1ZED A;  1ALI A;  3OT9 A;  2QZU A;  1AJC A;  1KH4 A;  3SZZ A;  1E33 P;  3DPC A;  1KHN A;  1KH9 A;  3M8Z A; 
#chains in the KnotProt database with same CATH homology
 1KHL A;  3BDG A;  3MK1 A;  1ED9 A;  1ELX A;  1P49 A;  3TX0 A;  3T00 A;  1ANJ A;  3NVL A;  1EI6 A;  1AJB A;  3UNY A;  1EJJ A;  3MK0 A;  1URA A;  3UN3 A;  4FDJ A;  3UN2 A;  1AJD A;  1ZEF A;  1B8J A;  1SHQ A;  3IGZ B;  3BDH A;  2GA3 A;  3MK2 A;  1URB A;  1KH5 A;  1ANI A;  1HQA A;  1SHN A;  3CMR A;  1N2L A;  1KHK A;  3BDG B;  1E1Z P;  1O99 A;  3T01 A;  3M8Y A;  3UN5 A;  2GLQ A;  1KH7 A;  1K7H A;  1ELZ A;  4FDI A;  1EQJ A;  1ELY A;  3DYC A;  1EW8 A;  3ED4 A;  1KHJ A;  3TWZ A;  1N2K A;  3SZY A;  1E3C P;  1ZEB A;  1EW9 A;  1HJK A;  3M7V A;  2IFY A;  3M8W A;  1ALJ A;  1AUK A;  1Y6V A;  1E2S P;  3BDF A;  3IGY B;  1AJA A;  1O98 A;  3T02 A;  1ED8 A;  2G9Y A;  1HDH A;  1ALK A;  3UO0 A;  2ANH A;  1EW2 A;  1Y7A A;  1FSU A;  1ZED A;  1ALI A;  3OT9 A;  2QZU A;  1AJC A;  1KH4 A;  3SZZ A;  1E33 P;  3DPC A;  1KHN A;  1KH9 A;  3M8Z A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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