3N4KA

Putative rna methyltransferase from yersinia pestis in complex with s-adenosyl-l-homocysteine.
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 85-126 42 1-84, 127-163 84 37 knot
Chain Sequence
NAMLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHHHDYQAFLDSEKLDSTQPARLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPAYILDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQLGYPGALLK
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 83-127 45 1-82, 128-163 82 36 knot
view details
3.1 86-131 46 1-82, 151-163 83-85, 132-150 82 13 slipknot
view details
2.1 87-150 64 1-82, 159-163 83-86, 151-158 82 5 slipknot
view details
2.1 87-158 72 159-163 1-82 83-86 82 4 slipknot
sequence length 163
structure length 163
publication title X-ray crystal structure of putative RNA methyltransferase from Yersinia pestis.
rcsb
molecule tags Transferase
molecule keywords RNA methyltransferase
source organism Yersinia pestis
total genus Genus: 52
ec nomenclature ec 2.1.1.207: tRNA (cytidine(34)-2'-O)-methyltransferase.
pdb deposition date 2010-05-21
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00588 SpoU_methylase SpoU rRNA Methylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 3n4kA00
1UALA 4H3YA 2YY8A 3KY7A 1X7OA 3NK7A 3AIAA 1VHKA 1UAKA 1UAJA 2CX8A 1MXIA 3N4KA 4CNFB 3ILKA 1TO0A 4E8BA 1K3RA 3NK6A 1P9PA 3IEFA 3N4JA 3DCMX 3KTYA 3ONPA 1NS5A 3AI9X 1J85A 4CNGB 4CNEB 1VH0A 3E5YA 1V2XA 1V6ZA 2QWVA 3L8UA 4FAKA 3QUVA 3KNUA 3GYQA 2HA8A 1UAMA 4H3ZA 1VHYA 1ZJRA 3AXZA 2Z0YA 1GZ0A 2I6DA 1X7PA 2QMMA 1O6DA 2O3AA 4IG6A 3IC6A 1NXZA
chains in the KnotProt database with same CATH superfamily
1UALA 4H3YA 2YY8A 3KY7A 1X7OA 3NK7A 3AIAA 1VHKA 1UAKA 1UAJA 2CX8A 1MXIA 3N4KA 4CNFB 3ILKA 1TO0A 4E8BA 1K3RA 3NK6A 1P9PA 3IEFA 3N4JA 3DCMX 3KTYA 3ONPA 1NS5A 3AI9X 1J85A 4CNGB 4CNEB 1VH0A 3E5YA 1V2XA 1V6ZA 2QWVA 3L8UA 4FAKA 3QUVA 3KNUA 3GYQA 2HA8A 1UAMA 4H3ZA 1VHYA 1ZJRA 3AXZA 2Z0YA 1GZ0A 2I6DA 1X7PA 2QMMA 1O6DA 2O3AA 4IG6A 3IC6A 1NXZA
chains in the KnotProt database with same CATH topology
1UALA 4H3YA 2YY8A 3KY7A 1X7OA 3NK7A 3AIAA 1VHKA 1UAKA 1UAJA 2CX8A 1MXIA 3N4KA 4CNFB 3ILKA 1TO0A 4E8BA 1K3RA 3NK6A 1P9PA 3IEFA 3N4JA 3DCMX 3KTYA 3ONPA 1NS5A 3AI9X 1J85A 4CNGB 4CNEB 1VH0A 3E5YA 1V2XA 1V6ZA 2QWVA 3L8UA 4FAKA 3QUVA 3KNUA 3GYQA 2HA8A 1UAMA 4H3ZA 1VHYA 1ZJRA 3AXZA 2Z0YA 1GZ0A 2I6DA 1X7PA 2QMMA 1O6DA 2O3AA 4IG6A 3IC6A 1NXZA
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 1UAL A;  4H3Y A;  2YY8 A;  3KY7 A;  1X7O A;  3NK7 A;  3AIA A;  1VHK A;  1UAK A;  1UAJ A;  2CX8 A;  1MXI A;  3N4K A;  4CNF B;  3ILK A;  1TO0 A;  4E8B A;  1K3R A;  3NK6 A;  1P9P A;  3IEF A;  3N4J A;  3DCM X;  3KTY A;  3ONP A;  1NS5 A;  3AI9 X;  1J85 A;  4CNG B;  4CNE B;  1VH0 A;  3E5Y A;  1V2X A;  1V6Z A;  2QWV A;  3L8U A;  4FAK A;  3QUV A;  3KNU A;  3GYQ A;  2HA8 A;  1UAM A;  4H3Z A;  1VHY A;  1ZJR A;  3AXZ A;  2Z0Y A;  1GZ0 A;  2I6D A;  1X7P A;  2QMM A;  1O6D A;  2O3A A;  4IG6 A;  3IC6 A;  1NXZ A; 
#chains in the KnotProt database with same CATH topology
 1UAL A;  4H3Y A;  2YY8 A;  3KY7 A;  1X7O A;  3NK7 A;  3AIA A;  1VHK A;  1UAK A;  1UAJ A;  2CX8 A;  1MXI A;  3N4K A;  4CNF B;  3ILK A;  1TO0 A;  4E8B A;  1K3R A;  3NK6 A;  1P9P A;  3IEF A;  3N4J A;  3DCM X;  3KTY A;  3ONP A;  1NS5 A;  3AI9 X;  1J85 A;  4CNG B;  4CNE B;  1VH0 A;  3E5Y A;  1V2X A;  1V6Z A;  2QWV A;  3L8U A;  4FAK A;  3QUV A;  3KNU A;  3GYQ A;  2HA8 A;  1UAM A;  4H3Z A;  1VHY A;  1ZJR A;  3AXZ A;  2Z0Y A;  1GZ0 A;  2I6D A;  1X7P A;  2QMM A;  1O6D A;  2O3A A;  4IG6 A;  3IC6 A;  1NXZ A; 
#chains in the KnotProt database with same CATH homology
 1UAL A;  4H3Y A;  2YY8 A;  3KY7 A;  1X7O A;  3NK7 A;  3AIA A;  1VHK A;  1UAK A;  1UAJ A;  2CX8 A;  1MXI A;  3N4K A;  4CNF B;  3ILK A;  1TO0 A;  4E8B A;  1K3R A;  3NK6 A;  1P9P A;  3IEF A;  3N4J A;  3DCM X;  3KTY A;  3ONP A;  1NS5 A;  3AI9 X;  1J85 A;  4CNG B;  4CNE B;  1VH0 A;  3E5Y A;  1V2X A;  1V6Z A;  2QWV A;  3L8U A;  4FAK A;  3QUV A;  3KNU A;  3GYQ A;  2HA8 A;  1UAM A;  4H3Z A;  1VHY A;  1ZJR A;  3AXZ A;  2Z0Y A;  1GZ0 A;  2I6D A;  1X7P A;  2QMM A;  1O6D A;  2O3A A;  4IG6 A;  3IC6 A;  1NXZ A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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