KnotProt 2.0: A database of proteins with knots and slipknots

Found 54 chains in Knotted chains table. Displaying 1 - 54. Applied filters: Probabilistic

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Knots
Knotoids

Search results query: topological notation: K 4₁ 4₁

#pdbid|chain|deposition date|is S/K-not|(slip)knot types;
      
  6ptq|A|2019-10-17|K|4.1 4.1;
  6pu2|A|2019-10-17|K|4.1 4.1;
  6ptx|A|2019-10-17|K|4.1 4.1;
  6baf|A|2018-09-25|K|4.1 4.1;
  6bak|A|2018-09-25|K|4.1 4.1;
  6bao|A|2018-09-25|K|4.1 4.1;
  6bap|A|2018-09-25|K|4.1 4.1;
  6bay|A|2018-09-25|K|4.1 4.1;
  5viq|A|2018-09-13|K|4.1 4.1;
  5viv|A|2018-09-13|K|4.1 4.1;
  5c5k|A|2018-09-12|K|4.1 4.1;
  4xtq|A|2018-09-12|K|4.1 4.1;
  5mg0|A|2018-09-12|K|4.1 4.1;
  4rq9|A|2018-09-05|K|4.1 4.1;
  6fht|A|2018-04-19|K|4.1 4.1;
  5nfx|A|2018-04-18|K|4.1 4.1;
  5nwn|A|2018-04-18|K|4.1 4.1;
  5lbr|A|2016-11-13|K|4.1 4.1;
  5l8m|A|2016-11-08|K|4.1 4.1;
  5k5b|A|2016-11-06|K|4.1 4.1;
  4z1w|A|2016-01-22|K|4.1 4.1;
  4zrr|A|2016-01-22|K|4.1 4.1;
  4r6l|A|2015-07-22|K|4.1 4.1;
  4q0j|A|2014-10-07|K|4.1 4.1;
  4o8g|A|2014-10-01|K|4.1 4.1;
  3nop|C|2014-08-20|K|4.1 4.1;
  3not|C|2014-08-20|K|4.1 4.1;
  3nou|C|2014-08-20|K|4.1 4.1;
  3s7n|A|2014-08-18|K|4.1 4.1;
  3s7p|A|2014-08-18|K|4.1 4.1;
  3s7o|A|2014-08-15|K|4.1 4.1;
  4o01|B|2014-08-13|K|4.1 4.1;
  4o0p|A|2014-08-13|K|4.1 4.1;
  4o0p|B|2014-08-13|K|4.1 4.1;
  4o01|A|2014-08-13|K|4.1 4.1;
  4o01|D|2014-08-13|K|4.1 4.1;
  4cqh|A|2014-08-13|K|4.1 4.1;
  4q0h|A|2014-08-13|K|4.1 4.1;
  4q0i|A|2014-08-13|K|4.1 4.1;
  3zq5|A|2014-08-13|K|4.1 4.1;
  4o01|C|2014-08-13|K|4.1 4.1;
  4gw9|A|2014-07-31|K|4.1 4.1;
  2o9b|A|2014-07-31|K|4.1 4.1;
  2o9c|A|2014-07-31|K|4.1 4.1;
  2ool|A|2014-07-31|K|4.1 4.1;
  2vea|A|2014-07-31|K|4.1 4.1;
  3c2w|A|2014-07-31|K|4.1 4.1;
  3g6o|A|2014-07-31|K|4.1 4.1;
  3ibr|A|2014-07-31|K|4.1 4.1;
  3nhq|A|2014-07-31|K|4.1 4.1;
  3s7q|A|2014-07-31|K|4.1 4.1;
  4e04|A|2014-07-31|K|4.1 4.1;
  4ijg|A|2014-07-31|K|4.1 4.1;
  1ztu|A|2014-07-31|K|4.1 4.1;

Knot types		pdb	Title
K 4₁ 4₁		6ptqA	Dark, room temperature, pcm myxobacterial phytochrome, p2, wild type
K 4₁ 4₁		6pu2A	Dark, mutant h275t , 100k, pcm myxobacterial phytochrome, p2
K 4₁ 4₁		6ptxA	Dark, 100k, pcm myxobacterial phytochrome, p2, wild type,
K 4₁ 4₁		6bafA	Structure of the chromophore binding domain of stigmatella aurantiaca phytochrome p1, wild-type
K 4₁ 4₁		6bakA	The structure of the stigmatella aurantiaca phytochrome chromophore binding domain t289h mutant
K 4₁ 4₁		6baoA	Stigmatella aurantiaca phytochrome photosensory core module, wild type
K 4₁ 4₁		6bapA	Stigmatella aurantiaca bacterial phytochrome pas-gaf-phy, t289h mutant
K 4₁ 4₁		6bayA	Stigmatella aurantiaca bacterial phytochrome p1, pas-gaf-phy t289h mutant, room temperature structure
K 4₁ 4₁		5viqA	Crystal structure of monomeric near-infrared fluorescent protein mirfp709
K 4₁ 4₁	₁	5vivA	Crystal structure of monomeric near-infrared fluorescent protein mirfp670
K 4₁ 4₁		5c5kA	Structure of the pfr form of a canonical phytochrome
K 4₁ 4₁		4xtqA	Crystal structure of a mutant (c20s) of a near-infrared fluorescent protein bphp1-fp
K 4₁ 4₁	₁	5mg0A	Structure of pas-gaf fragment of deinococcus phytochrome by serial femtosecond crystallography
K 4₁ 4₁		4rq9A	Crystal structure of the chromophore-binding domain of stigmatella aurantiaca bacteriophytochrome (thr289his mutant) in the pr state
K 4₁ 4₁		6fhtA	Crystal structure of an artificial phytochrome regulated adenylate/guanylate cyclase in its dark adapted pr form
K 4₁ 4₁	₁	5nfxA	Deinococcus radiodurans bphp pas-gaf y263f mutant
K 4₁ 4₁	₁	5nwnA	Deinococcus radiodurans bphp pas-gaf-phy y263f mutant, dark
K 4₁ 4₁	₁	5lbrA	Wild-type pas-gaf fragment from deinococcus radiodurans bphp collected at sacla
K 4₁ 4₁	₁	5l8mA	Wild-type pas-gaf fragment from deinococcus radiodurans bphp collected at lcls
K 4₁ 4₁	₁	5k5bA	Wild-type pas-gaf fragment from deinococcus radiodurans bphp
K 4₁ 4₁	₁	4z1wA	Crystal structure of monomeric bacteriophytochrome mutant d207l y263f from synchrotron
K 4₁ 4₁	₁	4zrrA	Crystal structure of monomeric bacteriophytochrome mutant d207l y263f at 1.5 a resolution using a home source.
K 4₁ 4₁	₁	4r6lA	Crystal structure of bacteriophytochrome rpbphp2 from photosynthetic bacterium r. palustris
K 4₁ 4₁	₁	4q0jA	Deinococcus radiodurans bphp photosensory module
K 4₁ 4₁	₁	4o8gA	Structure of infrared fluorescent protein 1.4
K 4₁ 4₁		3nopC	Light-induced intermediate structure l1 of pseudomonas aeruginosa bacteriophytochrome
K 4₁ 4₁		3notC	Light-induced intermediate structure l2 of p. aeruginosa bacteriophytochrome
K 4₁ 4₁		3nouC	Light-induced intermediate structure l3 of p. aeruginosa bacteriophytochrome
K 4₁ 4₁	₁	3s7nA	Crystal structure of the alternate his 207 conformation of the infrared fluorescent d207h variant of deinococcus bacteriophytochrome chromophore binding domain at 2.45 angstrom resolution
K 4₁ 4₁	₁	3s7pA	Crystal structure of the infrared fluorescent d207h variant of deinococcus bacteriophytochrome chromophore binding domain at 1.72 angstrom resolution
K 4₁ 4₁	₁	3s7oA	Crystal structure of the infrared fluorescent d207h variant of deinococcus bacteriophytochrome chromophore binding domain at 1.24 angstrom resolution
K 4₁ 4₁	₁	4o01B	Crystal structure of d. radiodurans bacteriophytochrome photosensory core module in its illuminated form
K 4₁ 4₁	₁	4o0pA	Crystal structure of d. radiodurans bacteriophytochrome photosensory core module in its dark form
K 4₁ 4₁	₁	4o0pB	Crystal structure of d. radiodurans bacteriophytochrome photosensory core module in its dark form
K 4₁ 4₁	₁	4o01A	Crystal structure of d. radiodurans bacteriophytochrome photosensory core module in its illuminated form
K 4₁ 4₁	₁	4o01D	Crystal structure of d. radiodurans bacteriophytochrome photosensory core module in its illuminated form
K 4₁ 4₁	₁	4cqhA	Structure of infrared fluorescent protein ifp2.0
K 4₁ 4₁	₁	4q0hA	Deinococcus radiodurans bphp pas-gaf
K 4₁ 4₁	₁	4q0iA	Deinococcus radiodurans bphp pas-gaf d207a mutant
K 4₁ 4₁		3zq5A	Structure of the y263f mutant of the cyanobacterial phytochrome cph1
K 4₁ 4₁	₁	4o01C	Crystal structure of d. radiodurans bacteriophytochrome photosensory core module in its illuminated form
K 4₁ 4₁		4gw9A	Structure of a bacteriophytochrome and light-stimulated protomer swapping with a gene repressor
K 4₁ 4₁	₁	2o9bA	Crystal structure of bacteriophytochrome chromophore binding domain
K 4₁ 4₁		2o9cA	Crystal structure of bacteriophytochrome chromophore binding domain at 1.45 angstrom resolution
K 4₁ 4₁	₁	2oolA	Crystal structure of the chromophore-binding domain of an unusual bacteriophytochrome rpbphp3 from r. palustris
K 4₁ 4₁	₁	2veaA	The complete sensory module of the cyanobacterial phytochrome cph1 in the pr-state.
K 4₁ 4₁		3c2wA	Crystal structure of the photosensory core domain of p. aeruginosa bacteriophytochrome pabphp in the pfr state
K 4₁ 4₁		3g6oA	Crystal structure of p. aeruginosa bacteriophytochrome pabphp photosensory core domain mutant q188l
K 4₁ 4₁		3ibrA	Crystal structure of p. aeruginosa bacteriophytochrome photosensory core module mutant q188l in the mixed pr/pfr state
K 4₁ 4₁		3nhqA	The dark pfr structure of the photosensory core module of p. aeruginosa bacteriophytochrome
K 4₁ 4₁	₁	3s7qA	Crystal structure of a monomeric infrared fluorescent deinococcus radiodurans bacteriophytochrome chromophore binding domain
K 4₁ 4₁		4e04A	Rpbphp2 chromophore-binding domain crystallized by homologue-directed mutagenesis.
K 4₁ 4₁	₁	4ijgA	Crystal structure of monomeric bacteriophytochrome
K 4₁ 4₁	₁	1ztuA	Structure of the chromophore binding domain of bacterial phytochrome

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Search results query: topological notation: K 41 41

Search results query: topological notation: K 4₁ 4₁