KnotProt 2.0: A database of proteins with knots and slipknots

Found 50 chains in Knotoided chains table. Displaying 1 - 50. Applied filters: Probabilistic

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Knots
Knotoids

Search results query: topological notation for knotoids: S 2.1, 1.1

#pdbid|chain|deposition date|is S/K-not|(slip)knot types;
      
  6ki1|A|2019-11-28|S|2.1 1.1;
  6nff|A|2019-10-25|S|2.1 1.1;
  6qd8|A|2019-10-18|S|2.1 1.1;
  6qd7|A|2019-10-18|S|2.1 1.1;
  6rvx|A|2019-09-09|S|2.1 1.1;
  6r7r|A|2019-05-11|S|2.1 1.1;
  6ctf|A|2018-11-17|S|2.1 1.1;
  6ea7|A|2018-09-25|S|2.1 1.1;
  6ea5|A|2018-09-25|S|2.1 1.1;
  6dzl|A|2018-09-15|S|2.1 1.1;
  6dzm|A|2018-09-15|S|2.1 1.1;
  6g9i|A|2018-09-14|S|2.1 1.1;
  5xar|A|2018-09-13|S|2.1 1.1;
  5xat|A|2018-09-13|S|2.1 1.1;
  6g9b|A|2018-08-16|S|2.1 1.1;
  5xas|A|2018-06-12|S|2.1 1.1;
  5ken|A|2018-06-12|S|2.1 1.1;
  5kem|A|2018-06-12|S|2.1 1.1;
  5da0|A|2018-06-11|S|2.1 1.1;
  6f6s|A|2018-06-11|S|2.1 1.1;
  6f6n|A|2018-06-11|S|2.1 1.1;
  6f5u|A|2018-06-11|S|2.1 1.1;
  5jnx|C|2018-06-11|S|2.1 1.1;
  5hj3|C|2018-06-11|S|2.1 1.1;
  5f1b|A|2018-06-11|S|2.1 1.1;
  4p19|A|2018-06-11|S|2.1 1.1;
  2xtj|A|2018-06-11|S|2.1 1.1;
  3s88|I|2018-06-11|S|2.1 1.1;
  3ubd|A|2018-06-11|S|2.1 1.1;
  3v8f|A|2018-06-11|S|2.1 1.1;
  3v8g|A|2018-06-11|S|2.1 1.1;
  3ve0|I|2018-06-11|S|2.1 1.1;
  3x2d|A|2018-06-11|S|2.1 1.1;
  4ky0|A|2018-06-11|S|2.1 1.1;
  4oyf|A|2018-06-11|S|2.1 1.1;
  4oyg|A|2018-06-11|S|2.1 1.1;
  4oyg|C|2018-06-11|S|2.1 1.1;
  4oyg|D|2018-06-11|S|2.1 1.1;
  1lns|A|2018-06-11|S|2.1 1.1;
  4p19|B|2018-06-11|S|2.1 1.1;
  4p19|C|2018-06-11|S|2.1 1.1;
  4p1a|A|2018-06-11|S|2.1 1.1;
  4p1a|B|2018-06-11|S|2.1 1.1;
  4p3j|A|2018-06-11|S|2.1 1.1;
  4p3j|B|2018-06-11|S|2.1 1.1;
  4p3j|C|2018-06-11|S|2.1 1.1;
  4p6h|A|2018-06-11|S|2.1 1.1;
  4p6h|B|2018-06-11|S|2.1 1.1;
  4p6h|C|2018-06-11|S|2.1 1.1;
  4wsg|A|2018-06-11|S|2.1 1.1;

Knotoid types		pdb	Title
S 2.1, 1.1	₉	6ki1A	The transmembrane domain of a cyanobacterium bicarbonate transporter bica
S 2.1, 1.1		6nffA	Structure of x-prolyl dipeptidyl aminopeptidase from lactobacillus helveticus
S 2.1, 1.1		6qd8A	Em structure of a ebov-gp bound to 4m0368 neutralizing antibody
S 2.1, 1.1		6qd7A	Em structure of a ebov-gp bound to 3t0331 neutralizing antibody
S 2.1, 1.1	₄	6rvxA	Inward-open structure of the asct2 (slc1a5) mutant c467r in presence of tboa
S 2.1, 1.1	₅	6r7rA	Crystal structure of the glutamate transporter homologue glttk in complex with d-aspartate
S 2.1, 1.1		6ctfA	Crystal structure of gltph fast mutant - r276s/m395r
S 2.1, 1.1		6ea7A	Structure of ebov gpcl in complex with the pan-ebolavirus mab adi-15878
S 2.1, 1.1		6ea5A	Structure of bdbv gpcl in complex with the pan-ebolavirus mab adi-15878
S 2.1, 1.1		6dzlA	Ebola virus makona variant gp (mucin-deleted) in complex with pan-ebolavirus human antibody adi-15878 fab
S 2.1, 1.1		6dzmA	Bundibugyo virus gp (mucin-deleted) in complex with pan-ebolavirus human antibody adi-15878 fab
S 2.1, 1.1		6g9iA	Crystal structure of ebolavirus glycoprotein in complex with clomipramine
S 2.1, 1.1	₁₂	5xarA	Structural insights into the elevator-like mechanism of the sodium/citrate symporter cits
S 2.1, 1.1	₇	5xatA	Structural insights into the elevator-like mechanism of the sodium/citrate symporter cits
S 2.1, 1.1		6g9bA	Crystal structure of ebolavirus glycoprotein in complex with imipramine
S 2.1, 1.1	₇	5xasA	Structural insights into the elevator-like mechanism of the sodium/citrate symporter cits
S 2.1, 1.1		5kenA	Ebov gp in complex with variable fab domains of iggs c4g7 and c13c6
S 2.1, 1.1		5kemA	Ebov sgp in complex with variable fab domains of iggs c13c6 and bdbv91
S 2.1, 1.1	₂	5da0A	Structure of the the slc26 transporter slc26dg in complex with a nanobody
S 2.1, 1.1		6f6sA	Crystal structure of ebolavirus glycoprotein in complex with benztropine
S 2.1, 1.1		6f6nA	Crystal structure of ebolavirus glycoprotein in complex with sertraline
S 2.1, 1.1		6f5uA	Crystal structure of ebolavirus glycoprotein in complex with bepridil
S 2.1, 1.1		5jnxC	The 6.6 a cryo-em structure of the full-length human npc1 in complex with the cleaved glycoprotein of ebola virus
S 2.1, 1.1		5hj3C	Crystal structure of host-primed ebola virus gp, gpcl.
S 2.1, 1.1		5f1bA	Structural basis of ebola virus entry: viral glycoprotein bound to its endosomal receptor niemann-pick c1
S 2.1, 1.1		4p19A	Closed, apo inward-facing state of the glutamate transporter homologue gltph
S 2.1, 1.1	₂	2xtjA	The crystal structure of pcsk9 in complex with 1d05 fab
S 2.1, 1.1		3s88I	Crystal structure of sudan ebolavirus glycoprotein (strain gulu) bound to 16f6
S 2.1, 1.1	₃	3ubdA	Structure of n-terminal domain of rsk2 kinase in complex with flavonoid glycoside sl0101
S 2.1, 1.1		3v8fA	Crystal structure of crosslinked gltph v216c-m385c mutant
S 2.1, 1.1		3v8gA	Crystal structure of an asymmetric trimer of a glutamate transporter homologue (gltph)
S 2.1, 1.1		3ve0I	Crystal structure of sudan ebolavirus glycoprotein (strain boniface) bound to 16f6
S 2.1, 1.1		3x2dA	Crystal structure of marburg virus gp in complex with the human survivor antibody mr78
S 2.1, 1.1	₁₀	4ky0A	Crystal structure of a substrate-free glutamate transporter homologue from thermococcus kodakarensis
S 2.1, 1.1	₉	4oyfA	Crystal structure of gltph r397a in sodium-bound state
S 2.1, 1.1		4oygA	Crystal structure of gltph r397a in complex with na+ and l-asp
S 2.1, 1.1		4oygC	Crystal structure of gltph r397a in complex with na+ and l-asp
S 2.1, 1.1		4oygD	Crystal structure of gltph r397a in complex with na+ and l-asp
S 2.1, 1.1		1lnsA	Crystal structure analysis of the x-prolyl dipeptidyl aminopeptidase from lactococcus lactis
S 2.1, 1.1		4p19B	Closed, apo inward-facing state of the glutamate transporter homologue gltph
S 2.1, 1.1		4p19C	Closed, apo inward-facing state of the glutamate transporter homologue gltph
S 2.1, 1.1		4p1aA	Thallium-bound inward-facing state of the glutamate transporter homologue gltph
S 2.1, 1.1		4p1aB	Thallium-bound inward-facing state of the glutamate transporter homologue gltph
S 2.1, 1.1		4p3jA	Apo inward-facing state of the glutamate transporter homologue gltph in alkali-free conditions
S 2.1, 1.1		4p3jB	Apo inward-facing state of the glutamate transporter homologue gltph in alkali-free conditions
S 2.1, 1.1		4p3jC	Apo inward-facing state of the glutamate transporter homologue gltph in alkali-free conditions
S 2.1, 1.1		4p6hA	Tl+-bound inward-facing state (bound conformation) of the glutamate transporter homologue gltph
S 2.1, 1.1		4p6hB	Tl+-bound inward-facing state (bound conformation) of the glutamate transporter homologue gltph
S 2.1, 1.1		4p6hC	Tl+-bound inward-facing state (bound conformation) of the glutamate transporter homologue gltph
S 2.1, 1.1		4wsgA	Crystal structure of soluble wr piv5 f-gcnt

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Search results query: topological notation for knotoids: S 2.1, 1.1