1GZ0A

23s ribosomal rna g2251 2'o-methyltransferase rlmb
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 172-212 41 1-171, 213-242 171 30 knot
Chain Sequence
SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQRS
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 172-213 42 1-171, 214-242 171 29 knot
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2.1 170-210 41 1-169 216-242 211-215 169 27 slipknot
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3.1 173-226 54 1-171, 233-242 172-172, 227-232 171 10 slipknot
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2.1 173-232 60 1-171, 237-242 172-172, 233-236 171 6 slipknot
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3.1 173-236 64 237-242 1-171 172-172 171 5 slipknot
view details
3.1 174-233 60 234-242 1-172 173-173 172 8 slipknot
sequence length 242
structure length 242
publication title The Structure of the Rlmb 23S Rrna Methyltransferase Reveals a New Methyltransferase Fold with a Unique Knot
pubmed doi rcsb
molecule tags Transferase
molecule keywords HYPOTHETICAL TRNA/RRNA METHYLTRANSFERASE YJFH
source organism Escherichia coli
total genus Genus: 67
ec nomenclature ec 2.1.1.185: 23S rRNA (guanosine(2251)-2'-O)-methyltransferase.
pdb deposition date 2002-05-03
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00588 SpoU_methylase SpoU rRNA Methylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1330.30 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A; 60s Ribosomal Protein L30; Chain: A; 1gz0A01
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 1gz0A02
2YY8A 3AI9X 3AIAA 1P9PA 1UAKA 4H3ZA 1O6DA 3N4KA 3GYQA 1K3RA 3L8UA 3NK7A 3DCMX 3NK6A 2QWVA 3IC6A 1V2XA 1X7OA 3KY7A 4FAKA 4IG6A 1UAJA 3AXZA 1V6ZA 1TO0A 1GZ0A 3ONPA 1J85A 3ILKA 2CX8A 1NS5A 2QMMA 3QUVA 3E5YA 4H3YA 1UALA 1VHKA 1VHYA 1X7PA 4CNGB 1MXIA 4CNEB 2I6DA 3IEFA 4E8BA 3N4JA 1NXZA 4CNFB 1VH0A 2HA8A 3KNUA 2O3AA 2Z0YA 1ZJRA 1UAMA 3KTYA
chains in the KnotProt database with same CATH superfamily
2YY8A 3AI9X 3AIAA 1P9PA 1UAKA 4H3ZA 1O6DA 3N4KA 3GYQA 1K3RA 3L8UA 3NK7A 3DCMX 3NK6A 2QWVA 3IC6A 1V2XA 1X7OA 3KY7A 4FAKA 4IG6A 1UAJA 3AXZA 1V6ZA 1TO0A 1GZ0A 3ONPA 1J85A 3ILKA 2CX8A 1NS5A 2QMMA 3QUVA 3E5YA 4H3YA 1UALA 1VHKA 1VHYA 1X7PA 4CNGB 1MXIA 4CNEB 2I6DA 3IEFA 4E8BA 3N4JA 1NXZA 4CNFB 1VH0A 2HA8A 3KNUA 2O3AA 2Z0YA 1ZJRA 1UAMA 3KTYA
chains in the KnotProt database with same CATH topology
2YY8A 3AI9X 3AIAA 1P9PA 1UAKA 4H3ZA 1O6DA 3N4KA 3GYQA 1K3RA 3L8UA 3NK7A 3DCMX 3NK6A 2QWVA 3IC6A 1V2XA 1X7OA 3KY7A 4FAKA 4IG6A 1UAJA 3AXZA 1V6ZA 1TO0A 1GZ0A 3ONPA 1J85A 3ILKA 2CX8A 1NS5A 2QMMA 3QUVA 3E5YA 4H3YA 1UALA 1VHKA 1VHYA 1X7PA 4CNGB 1MXIA 4CNEB 2I6DA 3IEFA 4E8BA 3N4JA 1NXZA 4CNFB 1VH0A 2HA8A 3KNUA 2O3AA 2Z0YA 1ZJRA 1UAMA 3KTYA
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 2YY8 A;  3AI9 X;  3AIA A;  1P9P A;  1UAK A;  4H3Z A;  1O6D A;  3N4K A;  3GYQ A;  1K3R A;  3L8U A;  3NK7 A;  3DCM X;  3NK6 A;  2QWV A;  3IC6 A;  1V2X A;  1X7O A;  3KY7 A;  4FAK A;  4IG6 A;  1UAJ A;  3AXZ A;  1V6Z A;  1TO0 A;  1GZ0 A;  3ONP A;  1J85 A;  3ILK A;  2CX8 A;  1NS5 A;  2QMM A;  3QUV A;  3E5Y A;  4H3Y A;  1UAL A;  1VHK A;  1VHY A;  1X7P A;  4CNG B;  1MXI A;  4CNE B;  2I6D A;  3IEF A;  4E8B A;  3N4J A;  1NXZ A;  4CNF B;  1VH0 A;  2HA8 A;  3KNU A;  2O3A A;  2Z0Y A;  1ZJR A;  1UAM A;  3KTY A; 
#chains in the KnotProt database with same CATH topology
 2YY8 A;  3AI9 X;  3AIA A;  1P9P A;  1UAK A;  4H3Z A;  1O6D A;  3N4K A;  3GYQ A;  1K3R A;  3L8U A;  3NK7 A;  3DCM X;  3NK6 A;  2QWV A;  3IC6 A;  1V2X A;  1X7O A;  3KY7 A;  4FAK A;  4IG6 A;  1UAJ A;  3AXZ A;  1V6Z A;  1TO0 A;  1GZ0 A;  3ONP A;  1J85 A;  3ILK A;  2CX8 A;  1NS5 A;  2QMM A;  3QUV A;  3E5Y A;  4H3Y A;  1UAL A;  1VHK A;  1VHY A;  1X7P A;  4CNG B;  1MXI A;  4CNE B;  2I6D A;  3IEF A;  4E8B A;  3N4J A;  1NXZ A;  4CNF B;  1VH0 A;  2HA8 A;  3KNU A;  2O3A A;  2Z0Y A;  1ZJR A;  1UAM A;  3KTY A; 
#chains in the KnotProt database with same CATH homology
 2YY8 A;  3AI9 X;  3AIA A;  1P9P A;  1UAK A;  4H3Z A;  1O6D A;  3N4K A;  3GYQ A;  1K3R A;  3L8U A;  3NK7 A;  3DCM X;  3NK6 A;  2QWV A;  3IC6 A;  1V2X A;  1X7O A;  3KY7 A;  4FAK A;  4IG6 A;  1UAJ A;  3AXZ A;  1V6Z A;  1TO0 A;  1GZ0 A;  3ONP A;  1J85 A;  3ILK A;  2CX8 A;  1NS5 A;  2QMM A;  3QUV A;  3E5Y A;  4H3Y A;  1UAL A;  1VHK A;  1VHY A;  1X7P A;  4CNG B;  1MXI A;  4CNE B;  2I6D A;  3IEF A;  4E8B A;  3N4J A;  1NXZ A;  4CNF B;  1VH0 A;  2HA8 A;  3KNU A;  2O3A A;  2Z0Y A;  1ZJR A;  1UAM A;  3KTY A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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