3DCMX

Crystal structure of the thermotoga maritima spout family rna-methyltransferase protein tm1570 in complex with s-adenosyl-l-methionine
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 110-157 48 1-109, 158-188 109 31 knot
Chain Sequence
MLEKVYVALIHYPIKGKDGSIISTAVTNLDVHDIARTARTYNLKGYYIVTNLRAQQDMVSKMLKFWREGFGSRYNPSRAESLKLVKLKSYLEDVLEDIESVEGERPLIFFTSAKKRENDISFEEGRRIIIETEKPVLILLGTGWGLPDEILEISDYVLEPIRAQSDFNHLSVRAAAAIIIDRLIGENY
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 109-158 50 1-108, 159-188 108 30 knot
view details
2.1 107-154 48 1-27, 159-188 28-106, 155-158 27 30 slipknot
view details
2.1 112-183 72 184-188 1-108 109-111 108 4 slipknot
sequence length 188
structure length 188
publication title Crystal structure of Thermotoga maritima SPOUT superfamily RNA methyltransferase Tm1570 in complex with S-adenosyl-L-methionine
pubmed doi rcsb
molecule tags Transferase
molecule keywords Uncharacterized protein TM_1570
source organism Thermotoga maritima
total genus Genus: 62
ec nomenclature
pdb deposition date 2008-06-04
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF09936 Methyltrn_RNA_4 SAM-dependent RNA methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 3dcmX00
2CX8A 3QUVA 2O3AA 3AXZA 3IC6A 1O6DA 2I6DA 1V2XA 1VH0A 3AIAA 3NK6A 1UAMA 3E5YA 1UALA 1IPAA 1X7OA 3ILKA 1V6ZA 4H3ZA 1VHKA 1UAJA 1VHYA 4CNFB 1P9PA 2Z0YA 3GYQA 3AI9X 3IEFA 4CNGB 1K3RA 3DCMX 3KTYA 4CNEB 1X7PA 2YY8A 1ZJRA 2QMMA 3L8UA 1NS5A 4IG6A 1MXIA 1GZ0A 3ONPA 3KNUA 3N4KA 3NK7A 4E8BA 1NXZA 3KY7A 2QWVA 1TO0A 4H3YA 2HA8A 4FAKA 1UAKA 1J85A 3N4JA
chains in the KnotProt database with same CATH superfamily
2CX8A 3QUVA 2O3AA 3AXZA 3IC6A 1O6DA 2I6DA 1V2XA 1VH0A 3AIAA 3NK6A 1UAMA 3E5YA 1UALA 1IPAA 1X7OA 3ILKA 1V6ZA 4H3ZA 1VHKA 1UAJA 1VHYA 4CNFB 1P9PA 2Z0YA 3GYQA 3AI9X 3IEFA 4CNGB 1K3RA 3DCMX 3KTYA 4CNEB 1X7PA 2YY8A 1ZJRA 2QMMA 3L8UA 1NS5A 4IG6A 1MXIA 1GZ0A 3ONPA 3KNUA 3N4KA 3NK7A 4E8BA 1NXZA 3KY7A 2QWVA 1TO0A 4H3YA 2HA8A 4FAKA 1UAKA 1J85A 3N4JA
chains in the KnotProt database with same CATH topology
2CX8A 3QUVA 2O3AA 3AXZA 3IC6A 1O6DA 2I6DA 1V2XA 1VH0A 3AIAA 3NK6A 1UAMA 3E5YA 1UALA 1IPAA 1X7OA 3ILKA 1V6ZA 4H3ZA 1VHKA 1UAJA 1VHYA 4CNFB 1P9PA 2Z0YA 3GYQA 3AI9X 3IEFA 4CNGB 1K3RA 3DCMX 3KTYA 4CNEB 1X7PA 2YY8A 1ZJRA 2QMMA 3L8UA 1NS5A 4IG6A 1MXIA 1GZ0A 3ONPA 3KNUA 3N4KA 3NK7A 4E8BA 1NXZA 3KY7A 2QWVA 1TO0A 4H3YA 2HA8A 4FAKA 1UAKA 1J85A 3N4JA
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 2CX8 A;  3QUV A;  2O3A A;  3AXZ A;  3IC6 A;  1O6D A;  2I6D A;  1V2X A;  1VH0 A;  3AIA A;  3NK6 A;  1UAM A;  3E5Y A;  1UAL A;  1IPA A;  1X7O A;  3ILK A;  1V6Z A;  4H3Z A;  1VHK A;  1UAJ A;  1VHY A;  4CNF B;  1P9P A;  2Z0Y A;  3GYQ A;  3AI9 X;  3IEF A;  4CNG B;  1K3R A;  3DCM X;  3KTY A;  4CNE B;  1X7P A;  2YY8 A;  1ZJR A;  2QMM A;  3L8U A;  1NS5 A;  4IG6 A;  1MXI A;  1GZ0 A;  3ONP A;  3KNU A;  3N4K A;  3NK7 A;  4E8B A;  1NXZ A;  3KY7 A;  2QWV A;  1TO0 A;  4H3Y A;  2HA8 A;  4FAK A;  1UAK A;  1J85 A;  3N4J A; 
#chains in the KnotProt database with same CATH topology
 2CX8 A;  3QUV A;  2O3A A;  3AXZ A;  3IC6 A;  1O6D A;  2I6D A;  1V2X A;  1VH0 A;  3AIA A;  3NK6 A;  1UAM A;  3E5Y A;  1UAL A;  1IPA A;  1X7O A;  3ILK A;  1V6Z A;  4H3Z A;  1VHK A;  1UAJ A;  1VHY A;  4CNF B;  1P9P A;  2Z0Y A;  3GYQ A;  3AI9 X;  3IEF A;  4CNG B;  1K3R A;  3DCM X;  3KTY A;  4CNE B;  1X7P A;  2YY8 A;  1ZJR A;  2QMM A;  3L8U A;  1NS5 A;  4IG6 A;  1MXI A;  1GZ0 A;  3ONP A;  3KNU A;  3N4K A;  3NK7 A;  4E8B A;  1NXZ A;  3KY7 A;  2QWV A;  1TO0 A;  4H3Y A;  2HA8 A;  4FAK A;  1UAK A;  1J85 A;  3N4J A; 
#chains in the KnotProt database with same CATH homology
 2CX8 A;  3QUV A;  2O3A A;  3AXZ A;  3IC6 A;  1O6D A;  2I6D A;  1V2X A;  1VH0 A;  3AIA A;  3NK6 A;  1UAM A;  3E5Y A;  1UAL A;  1IPA A;  1X7O A;  3ILK A;  1V6Z A;  4H3Z A;  1VHK A;  1UAJ A;  1VHY A;  4CNF B;  1P9P A;  2Z0Y A;  3GYQ A;  3AI9 X;  3IEF A;  4CNG B;  1K3R A;  3DCM X;  3KTY A;  4CNE B;  1X7P A;  2YY8 A;  1ZJR A;  2QMM A;  3L8U A;  1NS5 A;  4IG6 A;  1MXI A;  1GZ0 A;  3ONP A;  3KNU A;  3N4K A;  3NK7 A;  4E8B A;  1NXZ A;  3KY7 A;  2QWV A;  1TO0 A;  4H3Y A;  2HA8 A;  4FAK A;  1UAK A;  1J85 A;  3N4J A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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