3DCMX

Crystal structure of the thermotoga maritima spout family rna-methyltransferase protein tm1570 in complex with s-adenosyl-l-methionine
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 110-157 48 1-109, 158-188 109 31 knot
Chain Sequence
MLEKVYVALIHYPIKGKDGSIISTAVTNLDVHDIARTARTYNLKGYYIVTNLRAQQDMVSKMLKFWREGFGSRYNPSRAESLKLVKLKSYLEDVLEDIESVEGERPLIFFTSAKKRENDISFEEGRRIIIETEKPVLILLGTGWGLPDEILEISDYVLEPIRAQSDFNHLSVRAAAAIIIDRLIGENY
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 109-158 50 1-108, 159-188 108 30 knot
view details
2.1 107-154 48 1-27, 159-188 28-106, 155-158 27 30 slipknot
view details
2.1 112-183 72 184-188 1-108 109-111 108 4 slipknot
sequence length 188
structure length 188
publication title Crystal structure of Thermotoga maritima SPOUT superfamily RNA methyltransferase Tm1570 in complex with S-adenosyl-L-methionine
pubmed doi rcsb
molecule tags Transferase
molecule keywords Uncharacterized protein TM_1570
source organism Thermotoga maritima
total genus Genus: 62
ec nomenclature
pdb deposition date 2008-06-04
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF09936 Methyltrn_RNA_4 SAM-dependent RNA methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 3dcmX00
1V2XA 4FAKA 1P9PA 3NK6A 2I6DA 4H3YA 4CNFB 3IC6A 2CX8A 1J85A 1MXIA 1X7PA 3AI9X 1VHYA 1O6DA 3QUVA 3AXZA 1K3RA 3ONPA 4E8BA 2O3AA 2QWVA 1X7OA 3KY7A 1UALA 1UAKA 1VHKA 2Z0YA 3ILKA 1NXZA 3KTYA 4CNEB 3N4KA 4IG6A 2YY8A 2HA8A 2QMMA 3IEFA 1IPAA 1TO0A 4CNGB 3E5YA 1V6ZA 1UAJA 3AIAA 3KNUA 1NS5A 3GYQA 3DCMX 3N4JA 3NK7A 1GZ0A 4H3ZA 1VH0A 1UAMA 3L8UA 1ZJRA
chains in the KnotProt database with same CATH superfamily
1V2XA 4FAKA 1P9PA 3NK6A 2I6DA 4H3YA 4CNFB 3IC6A 2CX8A 1J85A 1MXIA 1X7PA 3AI9X 1VHYA 1O6DA 3QUVA 3AXZA 1K3RA 3ONPA 4E8BA 2O3AA 2QWVA 1X7OA 3KY7A 1UALA 1UAKA 1VHKA 2Z0YA 3ILKA 1NXZA 3KTYA 4CNEB 3N4KA 4IG6A 2YY8A 2HA8A 2QMMA 3IEFA 1IPAA 1TO0A 4CNGB 3E5YA 1V6ZA 1UAJA 3AIAA 3KNUA 1NS5A 3GYQA 3DCMX 3N4JA 3NK7A 1GZ0A 4H3ZA 1VH0A 1UAMA 3L8UA 1ZJRA
chains in the KnotProt database with same CATH topology
1V2XA 4FAKA 1P9PA 3NK6A 2I6DA 4H3YA 4CNFB 3IC6A 2CX8A 1J85A 1MXIA 1X7PA 3AI9X 1VHYA 1O6DA 3QUVA 3AXZA 1K3RA 3ONPA 4E8BA 2O3AA 2QWVA 1X7OA 3KY7A 1UALA 1UAKA 1VHKA 2Z0YA 3ILKA 1NXZA 3KTYA 4CNEB 3N4KA 4IG6A 2YY8A 2HA8A 2QMMA 3IEFA 1IPAA 1TO0A 4CNGB 3E5YA 1V6ZA 1UAJA 3AIAA 3KNUA 1NS5A 3GYQA 3DCMX 3N4JA 3NK7A 1GZ0A 4H3ZA 1VH0A 1UAMA 3L8UA 1ZJRA
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 1V2X A;  4FAK A;  1P9P A;  3NK6 A;  2I6D A;  4H3Y A;  4CNF B;  3IC6 A;  2CX8 A;  1J85 A;  1MXI A;  1X7P A;  3AI9 X;  1VHY A;  1O6D A;  3QUV A;  3AXZ A;  1K3R A;  3ONP A;  4E8B A;  2O3A A;  2QWV A;  1X7O A;  3KY7 A;  1UAL A;  1UAK A;  1VHK A;  2Z0Y A;  3ILK A;  1NXZ A;  3KTY A;  4CNE B;  3N4K A;  4IG6 A;  2YY8 A;  2HA8 A;  2QMM A;  3IEF A;  1IPA A;  1TO0 A;  4CNG B;  3E5Y A;  1V6Z A;  1UAJ A;  3AIA A;  3KNU A;  1NS5 A;  3GYQ A;  3DCM X;  3N4J A;  3NK7 A;  1GZ0 A;  4H3Z A;  1VH0 A;  1UAM A;  3L8U A;  1ZJR A; 
#chains in the KnotProt database with same CATH topology
 1V2X A;  4FAK A;  1P9P A;  3NK6 A;  2I6D A;  4H3Y A;  4CNF B;  3IC6 A;  2CX8 A;  1J85 A;  1MXI A;  1X7P A;  3AI9 X;  1VHY A;  1O6D A;  3QUV A;  3AXZ A;  1K3R A;  3ONP A;  4E8B A;  2O3A A;  2QWV A;  1X7O A;  3KY7 A;  1UAL A;  1UAK A;  1VHK A;  2Z0Y A;  3ILK A;  1NXZ A;  3KTY A;  4CNE B;  3N4K A;  4IG6 A;  2YY8 A;  2HA8 A;  2QMM A;  3IEF A;  1IPA A;  1TO0 A;  4CNG B;  3E5Y A;  1V6Z A;  1UAJ A;  3AIA A;  3KNU A;  1NS5 A;  3GYQ A;  3DCM X;  3N4J A;  3NK7 A;  1GZ0 A;  4H3Z A;  1VH0 A;  1UAM A;  3L8U A;  1ZJR A; 
#chains in the KnotProt database with same CATH homology
 1V2X A;  4FAK A;  1P9P A;  3NK6 A;  2I6D A;  4H3Y A;  4CNF B;  3IC6 A;  2CX8 A;  1J85 A;  1MXI A;  1X7P A;  3AI9 X;  1VHY A;  1O6D A;  3QUV A;  3AXZ A;  1K3R A;  3ONP A;  4E8B A;  2O3A A;  2QWV A;  1X7O A;  3KY7 A;  1UAL A;  1UAK A;  1VHK A;  2Z0Y A;  3ILK A;  1NXZ A;  3KTY A;  4CNE B;  3N4K A;  4IG6 A;  2YY8 A;  2HA8 A;  2QMM A;  3IEF A;  1IPA A;  1TO0 A;  4CNG B;  3E5Y A;  1V6Z A;  1UAJ A;  3AIA A;  3KNU A;  1NS5 A;  3GYQ A;  3DCM X;  3N4J A;  3NK7 A;  1GZ0 A;  4H3Z A;  1VH0 A;  1UAM A;  3L8U A;  1ZJR A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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