3DCMX

Crystal structure of the thermotoga maritima spout family rna-methyltransferase protein tm1570 in complex with s-adenosyl-l-methionine
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 110-157 48 1-109, 158-188 109 31 knot
Chain Sequence
MLEKVYVALIHYPIKGKDGSIISTAVTNLDVHDIARTARTYNLKGYYIVTNLRAQQDMVSKMLKFWREGFGSRYNPSRAESLKLVKLKSYLEDVLEDIESVEGERPLIFFTSAKKRENDISFEEGRRIIIETEKPVLILLGTGWGLPDEILEISDYVLEPIRAQSDFNHLSVRAAAAIIIDRLIGENY
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 109-158 50 1-108, 159-188 108 30 knot
view details
2.1 107-154 48 1-27, 159-188 28-106, 155-158 27 30 slipknot
view details
2.1 112-183 72 184-188 1-108 109-111 108 4 slipknot
sequence length 188
structure length 188
publication title Crystal structure of Thermotoga maritima SPOUT superfamily RNA methyltransferase Tm1570 in complex with S-adenosyl-L-methionine
pubmed doi rcsb
molecule tags Transferase
molecule keywords Uncharacterized protein TM_1570
source organism Thermotoga maritima
total genus Genus: 62
ec nomenclature
pdb deposition date 2008-06-04
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF09936 Methyltrn_RNA_4 SAM-dependent RNA methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 3dcmX00
2QWVA 1NXZA 1P9PA 1VH0A 1VHKA 3N4JA 4H3ZA 3IC6A 1K3RA 1V6ZA 3KNUA 3NK6A 1VHYA 4IG6A 4CNFB 4H3YA 1GZ0A 3DCMX 1UALA 3KTYA 1X7PA 1ZJRA 3AI9X 1J85A 1UAJA 3QUVA 3AXZA 3IEFA 4CNGB 3ONPA 1UAKA 2QMMA 4E8BA 3KY7A 3ILKA 3N4KA 1O6DA 1MXIA 3NK7A 2Z0YA 2YY8A 1NS5A 1V2XA 1UAMA 1X7OA 4CNEB 3GYQA 2I6DA 1TO0A 3E5YA 2CX8A 2O3AA 3AIAA 4FAKA 3L8UA 2HA8A
chains in the KnotProt database with same CATH superfamily
2QWVA 1NXZA 1P9PA 1VH0A 1VHKA 3N4JA 4H3ZA 3IC6A 1K3RA 1V6ZA 3KNUA 3NK6A 1VHYA 4IG6A 4CNFB 4H3YA 1GZ0A 3DCMX 1UALA 3KTYA 1X7PA 1ZJRA 3AI9X 1J85A 1UAJA 3QUVA 3AXZA 3IEFA 4CNGB 3ONPA 1UAKA 2QMMA 4E8BA 3KY7A 3ILKA 3N4KA 1O6DA 1MXIA 3NK7A 2Z0YA 2YY8A 1NS5A 1V2XA 1UAMA 1X7OA 4CNEB 3GYQA 2I6DA 1TO0A 3E5YA 2CX8A 2O3AA 3AIAA 4FAKA 3L8UA 2HA8A
chains in the KnotProt database with same CATH topology
2QWVA 1NXZA 1P9PA 1VH0A 1VHKA 3N4JA 4H3ZA 3IC6A 1K3RA 1V6ZA 3KNUA 3NK6A 1VHYA 4IG6A 4CNFB 4H3YA 1GZ0A 3DCMX 1UALA 3KTYA 1X7PA 1ZJRA 3AI9X 1J85A 1UAJA 3QUVA 3AXZA 3IEFA 4CNGB 3ONPA 1UAKA 2QMMA 4E8BA 3KY7A 3ILKA 3N4KA 1O6DA 1MXIA 3NK7A 2Z0YA 2YY8A 1NS5A 1V2XA 1UAMA 1X7OA 4CNEB 3GYQA 2I6DA 1TO0A 3E5YA 2CX8A 2O3AA 3AIAA 4FAKA 3L8UA 2HA8A
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 2QWV A;  1NXZ A;  1P9P A;  1VH0 A;  1VHK A;  3N4J A;  4H3Z A;  3IC6 A;  1K3R A;  1V6Z A;  3KNU A;  3NK6 A;  1VHY A;  4IG6 A;  4CNF B;  4H3Y A;  1GZ0 A;  3DCM X;  1UAL A;  3KTY A;  1X7P A;  1ZJR A;  3AI9 X;  1J85 A;  1UAJ A;  3QUV A;  3AXZ A;  3IEF A;  4CNG B;  3ONP A;  1UAK A;  2QMM A;  4E8B A;  3KY7 A;  3ILK A;  3N4K A;  1O6D A;  1MXI A;  3NK7 A;  2Z0Y A;  2YY8 A;  1NS5 A;  1V2X A;  1UAM A;  1X7O A;  4CNE B;  3GYQ A;  2I6D A;  1TO0 A;  3E5Y A;  2CX8 A;  2O3A A;  3AIA A;  4FAK A;  3L8U A;  2HA8 A; 
#chains in the KnotProt database with same CATH topology
 2QWV A;  1NXZ A;  1P9P A;  1VH0 A;  1VHK A;  3N4J A;  4H3Z A;  3IC6 A;  1K3R A;  1V6Z A;  3KNU A;  3NK6 A;  1VHY A;  4IG6 A;  4CNF B;  4H3Y A;  1GZ0 A;  3DCM X;  1UAL A;  3KTY A;  1X7P A;  1ZJR A;  3AI9 X;  1J85 A;  1UAJ A;  3QUV A;  3AXZ A;  3IEF A;  4CNG B;  3ONP A;  1UAK A;  2QMM A;  4E8B A;  3KY7 A;  3ILK A;  3N4K A;  1O6D A;  1MXI A;  3NK7 A;  2Z0Y A;  2YY8 A;  1NS5 A;  1V2X A;  1UAM A;  1X7O A;  4CNE B;  3GYQ A;  2I6D A;  1TO0 A;  3E5Y A;  2CX8 A;  2O3A A;  3AIA A;  4FAK A;  3L8U A;  2HA8 A; 
#chains in the KnotProt database with same CATH homology
 2QWV A;  1NXZ A;  1P9P A;  1VH0 A;  1VHK A;  3N4J A;  4H3Z A;  3IC6 A;  1K3R A;  1V6Z A;  3KNU A;  3NK6 A;  1VHY A;  4IG6 A;  4CNF B;  4H3Y A;  1GZ0 A;  3DCM X;  1UAL A;  3KTY A;  1X7P A;  1ZJR A;  3AI9 X;  1J85 A;  1UAJ A;  3QUV A;  3AXZ A;  3IEF A;  4CNG B;  3ONP A;  1UAK A;  2QMM A;  4E8B A;  3KY7 A;  3ILK A;  3N4K A;  1O6D A;  1MXI A;  3NK7 A;  2Z0Y A;  2YY8 A;  1NS5 A;  1V2X A;  1UAM A;  1X7O A;  4CNE B;  3GYQ A;  2I6D A;  1TO0 A;  3E5Y A;  2CX8 A;  2O3A A;  3AIA A;  4FAK A;  3L8U A;  2HA8 A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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