3L8UA

Crystal structure of smu.1707c, a putative rrna methyltransferase from streptococcus mutans ua159
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 79-121 43 1-78, 122-161 78 40 knot
Chain Sequence
LGRNHVVLFQPQIPANTGNIARTCAATNTSLHIIRPMGFPIDDKKM------YWDLDVHFY-DSLNDFMNICSGKLHLITKFANKTYSDENYDDSEHHYFLFGREDKGLPEEFMRQHSEKALRIPVNDQHVRSLNLSNTVCMIVYEALRQQDFIGLELSHT
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 71-115 45 1-70, 116-154 70 39 knot
view details
2.1 68-112 45 1-67 118-154 113-117 67 37 slipknot
view details
2.1 74-116 43 117-154 1-70 71-73 70 37 slipknot
sequence length 161
structure length 154
publication title Crystal structure of SMU.1707c, a putative rRNA methyltransferase from streptococcus mutans UA159
rcsb
molecule tags Transferase
molecule keywords Putative rRNA methylase
source organism Streptococcus mutans
missing residues 47-52, 56
total genus Genus: 46
ec nomenclature
pdb deposition date 2010-01-04
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00588 SpoU_methylase SpoU rRNA Methylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 3l8uA00
2HA8A 3N4JA 4CNEB 1ZJRA 3KNUA 3ILKA 4CNFB 1VHYA 1UAMA 3ONPA 1NS5A 3E5YA 3L8UA 3IC6A 4H3ZA 1O6DA 3GYQA 1UAKA 3DCMX 3NK6A 1VHKA 2YY8A 1P9PA 4H3YA 2QWVA 3AI9X 1UALA 4FAKA 1K3RA 1TO0A 2CX8A 2QMMA 2O3AA 1UAJA 3IEFA 3QUVA 4IG6A 1X7PA 3KTYA 1MXIA 3AXZA 2Z0YA 3NK7A 1GZ0A 3N4KA 4E8BA 1V6ZA 1V2XA 1J85A 1NXZA 2I6DA 1X7OA 4CNGB 3KY7A 3AIAA 1VH0A
chains in the KnotProt database with same CATH superfamily
2HA8A 3N4JA 4CNEB 1ZJRA 3KNUA 3ILKA 4CNFB 1VHYA 1UAMA 3ONPA 1NS5A 3E5YA 3L8UA 3IC6A 4H3ZA 1O6DA 3GYQA 1UAKA 3DCMX 3NK6A 1VHKA 2YY8A 1P9PA 4H3YA 2QWVA 3AI9X 1UALA 4FAKA 1K3RA 1TO0A 2CX8A 2QMMA 2O3AA 1UAJA 3IEFA 3QUVA 4IG6A 1X7PA 3KTYA 1MXIA 3AXZA 2Z0YA 3NK7A 1GZ0A 3N4KA 4E8BA 1V6ZA 1V2XA 1J85A 1NXZA 2I6DA 1X7OA 4CNGB 3KY7A 3AIAA 1VH0A
chains in the KnotProt database with same CATH topology
2HA8A 3N4JA 4CNEB 1ZJRA 3KNUA 3ILKA 4CNFB 1VHYA 1UAMA 3ONPA 1NS5A 3E5YA 3L8UA 3IC6A 4H3ZA 1O6DA 3GYQA 1UAKA 3DCMX 3NK6A 1VHKA 2YY8A 1P9PA 4H3YA 2QWVA 3AI9X 1UALA 4FAKA 1K3RA 1TO0A 2CX8A 2QMMA 2O3AA 1UAJA 3IEFA 3QUVA 4IG6A 1X7PA 3KTYA 1MXIA 3AXZA 2Z0YA 3NK7A 1GZ0A 3N4KA 4E8BA 1V6ZA 1V2XA 1J85A 1NXZA 2I6DA 1X7OA 4CNGB 3KY7A 3AIAA 1VH0A
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 2HA8 A;  3N4J A;  4CNE B;  1ZJR A;  3KNU A;  3ILK A;  4CNF B;  1VHY A;  1UAM A;  3ONP A;  1NS5 A;  3E5Y A;  3L8U A;  3IC6 A;  4H3Z A;  1O6D A;  3GYQ A;  1UAK A;  3DCM X;  3NK6 A;  1VHK A;  2YY8 A;  1P9P A;  4H3Y A;  2QWV A;  3AI9 X;  1UAL A;  4FAK A;  1K3R A;  1TO0 A;  2CX8 A;  2QMM A;  2O3A A;  1UAJ A;  3IEF A;  3QUV A;  4IG6 A;  1X7P A;  3KTY A;  1MXI A;  3AXZ A;  2Z0Y A;  3NK7 A;  1GZ0 A;  3N4K A;  4E8B A;  1V6Z A;  1V2X A;  1J85 A;  1NXZ A;  2I6D A;  1X7O A;  4CNG B;  3KY7 A;  3AIA A;  1VH0 A; 
#chains in the KnotProt database with same CATH topology
 2HA8 A;  3N4J A;  4CNE B;  1ZJR A;  3KNU A;  3ILK A;  4CNF B;  1VHY A;  1UAM A;  3ONP A;  1NS5 A;  3E5Y A;  3L8U A;  3IC6 A;  4H3Z A;  1O6D A;  3GYQ A;  1UAK A;  3DCM X;  3NK6 A;  1VHK A;  2YY8 A;  1P9P A;  4H3Y A;  2QWV A;  3AI9 X;  1UAL A;  4FAK A;  1K3R A;  1TO0 A;  2CX8 A;  2QMM A;  2O3A A;  1UAJ A;  3IEF A;  3QUV A;  4IG6 A;  1X7P A;  3KTY A;  1MXI A;  3AXZ A;  2Z0Y A;  3NK7 A;  1GZ0 A;  3N4K A;  4E8B A;  1V6Z A;  1V2X A;  1J85 A;  1NXZ A;  2I6D A;  1X7O A;  4CNG B;  3KY7 A;  3AIA A;  1VH0 A; 
#chains in the KnotProt database with same CATH homology
 2HA8 A;  3N4J A;  4CNE B;  1ZJR A;  3KNU A;  3ILK A;  4CNF B;  1VHY A;  1UAM A;  3ONP A;  1NS5 A;  3E5Y A;  3L8U A;  3IC6 A;  4H3Z A;  1O6D A;  3GYQ A;  1UAK A;  3DCM X;  3NK6 A;  1VHK A;  2YY8 A;  1P9P A;  4H3Y A;  2QWV A;  3AI9 X;  1UAL A;  4FAK A;  1K3R A;  1TO0 A;  2CX8 A;  2QMM A;  2O3A A;  1UAJ A;  3IEF A;  3QUV A;  4IG6 A;  1X7P A;  3KTY A;  1MXI A;  3AXZ A;  2Z0Y A;  3NK7 A;  1GZ0 A;  3N4K A;  4E8B A;  1V6Z A;  1V2X A;  1J85 A;  1NXZ A;  2I6D A;  1X7O A;  4CNG B;  3KY7 A;  3AIA A;  1VH0 A; 
...loading similar chains, please wait...
similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling